PlantSME Plant secondary metabolism enzyme database

Phaseolus lunatus (phaseolus_lunatus)

Imported from atlas release summary for Phaseolus lunatus.

2295
Candidate Protein Records
2021
Pathway-Level Records
4726
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.21% Alkaloid pathway 22.56% Phenylpropanoid pathway 20.78% Flavonoid pathway 14.75% Rosmarinic acid pathway 8.41% Steroid pathway 6.28%
Family Distribution
C3'H/CYP98A 5.78% C4H 5.65% BAHD 5.54% UGT 4.61% UFGT 4.3% 7DLGT 4.19% POD 3.49% CYP76 3.36%
Other Families 63.08%
More Families (97)
IFS 158 3.34% 4CL 150 3.17% T3O 147 3.11% F3H 131 2.77% NMT 111 2.35% DWF4/CYP90B1 104 2.2% F3'H/CYP75B 99 2.09% STR 91 1.93% CODM/T6ODM 80 1.69% H6H 74 1.57% SGD 73 1.54% BR6OX2/CYP85A2 73 1.54% SMT1/SMT2/SMT3 73 1.54% CYP71 73 1.54% PAL 69 1.46% CAD 68 1.44% TRI/TRII 67 1.42% CAS 61 1.29% COMT 55 1.16% CSE 48 1.02% LAC 45 0.95% T16H 44 0.93% IFR 44 0.93% HCT 44 0.93% CYP90D1 41 0.87% 16OMT 40 0.85% PYKS 39 0.83% TPS 39 0.83% GES 37 0.78% 7DLH 37 0.78% BBE 34 0.72% ANR 34 0.72% RAS 34 0.72% G8O/G8H 31 0.66% FNS 31 0.66% GS 30 0.63% F5H/CYP84A 29 0.61% F3'5'H/CYP75A 27 0.57% CYP51G1 25 0.53% CCR 24 0.51% IO 23 0.49% PMT 23 0.49% ANS/LDOX 21 0.44% BR6OX1/CYP85A1 21 0.44% CHS 19 0.4% CYP80B1 17 0.36% COR 17 0.36% SLS 16 0.34% MPO 16 0.34% CNMT 15 0.32% CCoAOMT 15 0.32% TAT 15 0.32% CPD/CYP90A1 15 0.32% LAMT 14 0.3% 8HGO 14 0.3% NCS 14 0.3% GGPPS 14 0.3% DFR 11 0.23% CPR 11 0.23% SQE 10 0.21% SQS/FDFT1 10 0.21% DXS 10 0.21% CYP719 9 0.19% ISY 9 0.19% CHI 9 0.19% ROT3/CYP90C1 8 0.17% HPPR 7 0.15% DET2 7 0.15% HMGS 7 0.15% AACT 6 0.13% SMO1/SMO2 5 0.11% CPI1 5 0.11% HMGR 5 0.11% MVK 4 0.08% FPPS 4 0.08% MVD 4 0.08% TDC 3 0.06% 6OMT_4OMT_SOMT 3 0.06% MCT/IspD 3 0.06% DXR 3 0.06% PMK 3 0.06% TYDC_DDC 2 0.04% CYP80F1 2 0.04% XMT_MXMT_DXMT 2 0.04% DWF5 2 0.04% DWF1 2 0.04% HDR/IspH 2 0.04% ADC 1 0.02% ODC 1 0.02% FLS 1 0.02% DWF7 1 0.02% HYD1 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 550 18 BAHD (212) View species results
Alkaloid pathway 456 21 7DLGT (87) View species results
Phenylpropanoid pathway 420 11 POD (159) View species results
Flavonoid pathway 298 9 UFGT (192) View species results
Rosmarinic acid pathway 170 7 C4H (73) View species results
Steroid pathway 127 11 CAS (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1698 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Plun09G0035630.3 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Plun10G0030430.1 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Plun10G0030430.2 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Plun11G0000460.1 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Plun11G0001390.1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Plun11G0001410.1 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Plun11G0001970.1 Alkaloid NMT medium borderline NMT__00001__sp_A0A075D654_ANMT_RAUSE
Plun11G0035040.1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Plun11G0035040.2 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Plun11G0037260.1 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
Plun11G0037260.2 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH