PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.5% Phenylpropanoid pathway 25.94% Alkaloid pathway 20.74% Flavonoid pathway 8.59% Rosmarinic acid pathway 8.06% Steroid pathway 7.16%
Family Distribution
BAHD 8.13% 4CL 7.14% POD 6.25% NMT 5.81% C4H 4.52% C3'H/CYP98A 4.37% STR 3.58% CYP76 2.95%
Other Families 57.24%
More Families (95)
F3H 133 2.91% CODM/T6ODM 124 2.71% IFR 102 2.23% IFS 101 2.21% GS 96 2.1% BR6OX2/CYP85A2 92 2.01% T3O 88 1.92% CYP71 77 1.68% F3'H/CYP75B 76 1.66% DWF4/CYP90B1 70 1.53% PAL 63 1.38% SMT1/SMT2/SMT3 63 1.38% UFGT 62 1.35% PYKS 61 1.33% CSE 60 1.31% UGT 58 1.27% CAD 57 1.25% TRI/TRII 53 1.16% 7DLGT 50 1.09% RAS 49 1.07% SGD 43 0.94% PMT 42 0.92% CNMT 41 0.9% CAS 41 0.9% HCT 39 0.85% IO 34 0.74% T16H 33 0.72% CHS 33 0.72% FNS 31 0.68% MVK 31 0.68% SQS/FDFT1 30 0.66% SLS 29 0.63% H6H 29 0.63% MPO 29 0.63% COR 28 0.61% CPD/CYP90A1 26 0.57% LAC 24 0.52% 8HGO 22 0.48% G8O/G8H 21 0.46% F3'5'H/CYP75A 20 0.44% ANR 19 0.42% COMT 19 0.42% DFR 18 0.39% CCR 18 0.39% CPR 18 0.39% TPS 17 0.37% DWF5 16 0.35% GGPPS 15 0.33% AACT 15 0.33% CHI 13 0.28% MVD 13 0.28% DXS 12 0.26% MCT/IspD 12 0.26% NCS 11 0.24% GES 11 0.24% TAT 11 0.24% CYP90D1 10 0.22% 7DLH 9 0.2% XMT_MXMT_DXMT 9 0.2% FLS 9 0.2% CYP51G1 9 0.2% DXR 9 0.2% TDC 8 0.17% ROT3/CYP90C1 8 0.17% DET2 8 0.17% FPPS 8 0.17% MDS/IspF 8 0.17% TYDC_DDC 7 0.15% 16OMT 7 0.15% ANS/LDOX 7 0.15% CCoAOMT 7 0.15% DWF1 7 0.15% SMO1/SMO2 7 0.15% HDS/IspG 7 0.15% CMK/IspE 7 0.15% HMGR 6 0.13% HMGS 6 0.13% HDR/IspH 6 0.13% ADC 5 0.11% CYP80B1 5 0.11% BBE 4 0.09% LAMT 4 0.09% HPPR 4 0.09% SQE 4 0.09% CPI1 4 0.09% HYD1 3 0.07% FK 3 0.07% PMK 3 0.07% CYP719 2 0.04% ISY 2 0.04% F5H/CYP84A 2 0.04% BR6OX1/CYP85A1 2 0.04% DWF7 2 0.04% IDI 2 0.04% 6OMT_4OMT_SOMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Ppat24G0009570.3 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
Ppat25G0002340.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0002340.2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0002340.3 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0002340.4 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0002340.5 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0002340.6 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0002340.7 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0004290.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0004290.2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0004290.3 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0004290.4 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0004290.5 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat25G0004290.6 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Ppat26G0002590.1 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Ppat26G0002590.2 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH