Picochlorum sp (picochlorum_sp)
Imported from atlas release summary for Picochlorum sp.
87
Candidate Genes
77
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
87
Candidate Genes
4CL
11.19%
NMT
7.8%
POD
6.1%
BAHD
5.42%
IFR
5.08%
STR
4.07%
CYP71
3.73%
CNMT
2.71%
Other Families
53.9%
More Families (69)
CSE
7
2.37%
SMT1/SMT2/SMT3
7
2.37%
GS
6
2.03%
TRI/TRII
6
2.03%
C4H
6
2.03%
C3'H/CYP98A
6
2.03%
RAS
5
1.69%
CPR
5
1.69%
CAS
5
1.69%
CAD
4
1.36%
CCR
4
1.36%
FPPS
4
1.36%
PYKS
3
1.02%
IFS
3
1.02%
F3H
3
1.02%
PAL
3
1.02%
COMT
3
1.02%
SQS/FDFT1
3
1.02%
DET2
3
1.02%
DWF1
3
1.02%
CYP76
3
1.02%
GGPPS
3
1.02%
T3O
2
0.68%
8HGO
2
0.68%
LAMT
2
0.68%
TDC
2
0.68%
BBE
2
0.68%
SLS
2
0.68%
DFR
2
0.68%
ANR
2
0.68%
FNS
2
0.68%
BR6OX2/CYP85A2
2
0.68%
CPD/CYP90A1
2
0.68%
DWF4/CYP90B1
2
0.68%
SQE
2
0.68%
MVK
2
0.68%
MCT/IspD
2
0.68%
HDS/IspG
2
0.68%
AACT
2
0.68%
NCS
1
0.34%
T16H
1
0.34%
6OMT_4OMT_SOMT
1
0.34%
CODM/T6ODM
1
0.34%
ADC
1
0.34%
PMT
1
0.34%
G8O/G8H
1
0.34%
COR
1
0.34%
H6H
1
0.34%
SGD
1
0.34%
ODC
1
0.34%
TYDC_DDC
1
0.34%
16OMT
1
0.34%
F3'5'H/CYP75A
1
0.34%
F3'H/CYP75B
1
0.34%
LAC
1
0.34%
CCoAOMT
1
0.34%
TAT
1
0.34%
FK
1
0.34%
DWF7
1
0.34%
SMO1/SMO2
1
0.34%
HYD1
1
0.34%
CYP51G1
1
0.34%
HDR/IspH
1
0.34%
UGT
1
0.34%
IDI
1
0.34%
DXR
1
0.34%
MDS/IspF
1
0.34%
DXS
1
0.34%
CMK/IspE
1
0.34%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 32 | 12 | BAHD (12) | View species results |
| Phenylpropanoid pathway | 20 | 5 | POD (13) | View species results |
| Alkaloid pathway | 12 | 5 | NMT (6) | View species results |
| Steroid pathway | 12 | 8 | CAS (5) | View species results |
| Rosmarinic acid pathway | 6 | 3 | CPR (3) | View species results |
| Flavonoid pathway | 5 | 3 | 4CL (2) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 15 | 44 | BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, SLS, T16H, T3O |
| BAHD/acyltransferase | 2 | 21 | BAHD, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PspPicochlorum_contig_1070003880.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| PspPicochlorum_contig_1460014080.1 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| PspPicochlorum_contig_1500015300.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| PspPicochlorum_contig_1760021890.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| PspPicochlorum_contig_1950026860.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| PspPicochlorum_contig_2090029740.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| PspPicochlorum_contig_2230030320.1 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| PspPicochlorum_contig_290034700.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| PspPicochlorum_contig_40039090.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| PspPicochlorum_contig_410040910.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| PspPicochlorum_contig_420041450.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| PspPicochlorum_contig_450045760.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| PspPicochlorum_contig_570053880.1 | Alkaloid | NMT | low | borderline | NMT__00030__sp_Q43088_RBCMT_PEA |
| PspPicochlorum_contig_620056140.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| PspPicochlorum_contig_630057610.1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| PspPicochlorum_contig_660059580.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| PspPicochlorum_contig_700061210.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| PspPicochlorum_contig_840064580.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| PspPicochlorum_contig_840064590.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| PspPicochlorum_contig_840064990.1 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| PspPicochlorum_contig_850066430.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| PspPicochlorum_contig_860067220.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| PspPicochlorum_contig_960070600.1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |