PlantSME Plant secondary metabolism enzyme database

Picochlorum sp (picochlorum_sp)

Imported from atlas release summary for Picochlorum sp.

87
Candidate Genes
77
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 36.78% Phenylpropanoid pathway 22.99% Alkaloid pathway 13.79% Steroid pathway 13.79% Rosmarinic acid pathway 6.9% Flavonoid pathway 5.75%
Family Distribution
4CL 11.19% NMT 7.8% POD 6.1% BAHD 5.42% IFR 5.08% STR 4.07% CYP71 3.73% CNMT 2.71%
Other Families 53.9%
More Families (69)
CSE 7 2.37% SMT1/SMT2/SMT3 7 2.37% GS 6 2.03% TRI/TRII 6 2.03% C4H 6 2.03% C3'H/CYP98A 6 2.03% RAS 5 1.69% CPR 5 1.69% CAS 5 1.69% CAD 4 1.36% CCR 4 1.36% FPPS 4 1.36% PYKS 3 1.02% IFS 3 1.02% F3H 3 1.02% PAL 3 1.02% COMT 3 1.02% SQS/FDFT1 3 1.02% DET2 3 1.02% DWF1 3 1.02% CYP76 3 1.02% GGPPS 3 1.02% T3O 2 0.68% 8HGO 2 0.68% LAMT 2 0.68% TDC 2 0.68% BBE 2 0.68% SLS 2 0.68% DFR 2 0.68% ANR 2 0.68% FNS 2 0.68% BR6OX2/CYP85A2 2 0.68% CPD/CYP90A1 2 0.68% DWF4/CYP90B1 2 0.68% SQE 2 0.68% MVK 2 0.68% MCT/IspD 2 0.68% HDS/IspG 2 0.68% AACT 2 0.68% NCS 1 0.34% T16H 1 0.34% 6OMT_4OMT_SOMT 1 0.34% CODM/T6ODM 1 0.34% ADC 1 0.34% PMT 1 0.34% G8O/G8H 1 0.34% COR 1 0.34% H6H 1 0.34% SGD 1 0.34% ODC 1 0.34% TYDC_DDC 1 0.34% 16OMT 1 0.34% F3'5'H/CYP75A 1 0.34% F3'H/CYP75B 1 0.34% LAC 1 0.34% CCoAOMT 1 0.34% TAT 1 0.34% FK 1 0.34% DWF7 1 0.34% SMO1/SMO2 1 0.34% HYD1 1 0.34% CYP51G1 1 0.34% HDR/IspH 1 0.34% UGT 1 0.34% IDI 1 0.34% DXR 1 0.34% MDS/IspF 1 0.34% DXS 1 0.34% CMK/IspE 1 0.34%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 32 12 BAHD (12) View species results
Phenylpropanoid pathway 20 5 POD (13) View species results
Alkaloid pathway 12 5 NMT (6) View species results
Steroid pathway 12 8 CAS (5) View species results
Rosmarinic acid pathway 6 3 CPR (3) View species results
Flavonoid pathway 5 3 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 15 44 BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, SLS, T16H, T3O
BAHD/acyltransferase 2 21 BAHD, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
Reset
Gene Pathway Family Confidence Status Best Target
PspPicochlorum_contig_1350009220.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_200028520.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_2060029600.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_280032590.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_40039630.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_40040150.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_410041230.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_420041500.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_580055670.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_620057100.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_640058030.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PspPicochlorum_contig_960071930.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR