PlantSME Plant secondary metabolism enzyme database

Picochlorum sp (picochlorum_sp)

Imported from atlas release summary for Picochlorum sp.

87
Candidate Genes
77
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 36.78% Phenylpropanoid pathway 22.99% Alkaloid pathway 13.79% Steroid pathway 13.79% Rosmarinic acid pathway 6.9% Flavonoid pathway 5.75%
Family Distribution
4CL 11.19% NMT 7.8% POD 6.1% BAHD 5.42% IFR 5.08% STR 4.07% CYP71 3.73% CNMT 2.71%
Other Families 53.9%
More Families (69)
CSE 7 2.37% SMT1/SMT2/SMT3 7 2.37% GS 6 2.03% TRI/TRII 6 2.03% C4H 6 2.03% C3'H/CYP98A 6 2.03% RAS 5 1.69% CPR 5 1.69% CAS 5 1.69% CAD 4 1.36% CCR 4 1.36% FPPS 4 1.36% PYKS 3 1.02% IFS 3 1.02% F3H 3 1.02% PAL 3 1.02% COMT 3 1.02% SQS/FDFT1 3 1.02% DET2 3 1.02% DWF1 3 1.02% CYP76 3 1.02% GGPPS 3 1.02% T3O 2 0.68% 8HGO 2 0.68% LAMT 2 0.68% TDC 2 0.68% BBE 2 0.68% SLS 2 0.68% DFR 2 0.68% ANR 2 0.68% FNS 2 0.68% BR6OX2/CYP85A2 2 0.68% CPD/CYP90A1 2 0.68% DWF4/CYP90B1 2 0.68% SQE 2 0.68% MVK 2 0.68% MCT/IspD 2 0.68% HDS/IspG 2 0.68% AACT 2 0.68% NCS 1 0.34% T16H 1 0.34% 6OMT_4OMT_SOMT 1 0.34% CODM/T6ODM 1 0.34% ADC 1 0.34% PMT 1 0.34% G8O/G8H 1 0.34% COR 1 0.34% H6H 1 0.34% SGD 1 0.34% ODC 1 0.34% TYDC_DDC 1 0.34% 16OMT 1 0.34% F3'5'H/CYP75A 1 0.34% F3'H/CYP75B 1 0.34% LAC 1 0.34% CCoAOMT 1 0.34% TAT 1 0.34% FK 1 0.34% DWF7 1 0.34% SMO1/SMO2 1 0.34% HYD1 1 0.34% CYP51G1 1 0.34% HDR/IspH 1 0.34% UGT 1 0.34% IDI 1 0.34% DXR 1 0.34% MDS/IspF 1 0.34% DXS 1 0.34% CMK/IspE 1 0.34%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 32 12 BAHD (12) View species results
Phenylpropanoid pathway 20 5 POD (13) View species results
Alkaloid pathway 12 5 NMT (6) View species results
Steroid pathway 12 8 CAS (5) View species results
Rosmarinic acid pathway 6 3 CPR (3) View species results
Flavonoid pathway 5 3 4CL (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 15 44 BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP76, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, G8O/G8H, IFS, SLS, T16H, T3O
BAHD/acyltransferase 2 21 BAHD, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
PspPicochlorum_contig_40038680.1 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
PspPicochlorum_contig_450045360.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
PspPicochlorum_contig_450046960.1 Phenylpropanoid POD low borderline POD__00016__sp_Q6QPJ6_PRXQ_POPJC
PspPicochlorum_contig_570053810.1 Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC
PspPicochlorum_contig_630057800.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
PspPicochlorum_contig_640058190.1 Phenylpropanoid POD medium pass POD__00009__sp_P83564_GPX1_CHLRE
PspPicochlorum_contig_640058710.1 Phenylpropanoid POD medium pass POD__00017__sp_Q75SY5_PRXQ_GENTR