PlantSME Plant secondary metabolism enzyme database

Plicanthus hirtellus (plicanthus_hirtellus)

Imported from atlas release summary for Plicanthus hirtellus.

705
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.54% Phenylpropanoid pathway 23.97% Alkaloid pathway 21.13% Flavonoid pathway 13.33% Rosmarinic acid pathway 10.92% Steroid pathway 6.1%
Family Distribution
C4H 8.38% C3'H/CYP98A 5.95% CYP76 5.48% 4CL 5.34% BAHD 4.63% IFS 3.7% POD 3.46% F3H 3.14%
Other Families 59.93%
More Families (96)
STR 59 2.76% BR6OX2/CYP85A2 59 2.76% NMT 57 2.67% T3O 46 2.15% DWF4/CYP90B1 46 2.15% H6H 45 2.11% F3'H/CYP75B 43 2.01% GS 38 1.78% TRI/TRII 38 1.78% IFR 34 1.59% IO 32 1.5% G8O/G8H 29 1.36% UGT 29 1.36% T16H 27 1.26% PAL 27 1.26% UFGT 26 1.22% PYKS 25 1.17% 7DLGT 25 1.17% CODM/T6ODM 23 1.08% SMT1/SMT2/SMT3 23 1.08% HCT 22 1.03% CAD 21 0.98% CHS 20 0.94% CSE 19 0.89% FNS 18 0.84% BR6OX1/CYP85A1 18 0.84% LAC 17 0.8% CAS 16 0.75% TPS 16 0.75% CYP719 15 0.7% F3'5'H/CYP75A 15 0.7% RAS 15 0.7% SGD 14 0.66% COR 13 0.61% NCS 13 0.61% COMT 13 0.61% CYP71 13 0.61% CNMT 12 0.56% ANR 12 0.56% SLS 11 0.51% 8HGO 9 0.42% F5H/CYP84A 9 0.42% CPD/CYP90A1 9 0.42% CYP90D1 9 0.42% XMT_MXMT_DXMT 8 0.37% PMT 8 0.37% CYP80B1 7 0.33% GES 7 0.33% SMO1/SMO2 7 0.33% ROT3/CYP90C1 7 0.33% GGPPS 7 0.33% 7DLH 6 0.28% MPO 6 0.28% ISY 6 0.28% CPR 6 0.28% MVK 6 0.28% AACT 6 0.28% DXS 6 0.28% FPPS 6 0.28% LAMT 5 0.23% CYP80F1 5 0.23% HPPR 5 0.23% DET2 5 0.23% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% DWF1 4 0.19% CYP51G1 4 0.19% HYD1 4 0.19% MVD 4 0.19% MCT/IspD 4 0.19% ADC 3 0.14% 16OMT 3 0.14% CCR 3 0.14% TAT 3 0.14% SQS/FDFT1 3 0.14% HDR/IspH 3 0.14% IDI 3 0.14% TDC 2 0.09% 6OMT_4OMT_SOMT 2 0.09% CHI 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF5 2 0.09% SQE 2 0.09% DXR 2 0.09% HMGR 2 0.09% MDS/IspF 2 0.09% TYDC_DDC 1 0.05% ODC 1 0.05% CPI1 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% HMGS 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 173 20 BAHD (67) View species results
Phenylpropanoid pathway 169 10 POD (62) View species results
Alkaloid pathway 149 19 TRI/TRII (23) View species results
Flavonoid pathway 94 9 4CL (21) View species results
Rosmarinic acid pathway 77 7 C4H (32) View species results
Steroid pathway 43 12 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 912 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 136 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Phir1872110036300 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Phir1998380041630 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Phir2036280044690 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Phir2092640049960 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Phir2146540055130 Phenylpropanoid 4CL medium pass 4CL__00017__sp_Q9S725_4CL2_ARATH
Phir2229640069920 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Phir2235680071420 Phenylpropanoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2249120076530 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2257870083450 Phenylpropanoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
Phir2272900120980 Phenylpropanoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2277780146960 Phenylpropanoid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2279350158810 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
Phir2279460160530 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Phir2284190178400 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Phir2790195900 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Phir3730208530 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Phir3730208550 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Phir420218480 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Phir4460223900 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Phir4480225110 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Phir5990253680 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Phir650261560 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Phir890280210 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Phir910280580 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Phir920281300 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Phir950282810 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Phir1080003070 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Phir1200005910 Rosmarinic Acid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Phir1382000011410 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Phir1416200015820 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Phir1416200015830 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Phir1421120016530 Rosmarinic Acid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Phir1486950019030 Rosmarinic Acid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Phir1624180025930 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Phir1628990026160 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Phir1628990026170 Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Phir1810032670 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Phir1866720035260 Rosmarinic Acid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
Phir1872110036300 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Phir1998380041630 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Phir2036280044690 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Phir2092640049960 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Phir2146540055130 Rosmarinic Acid 4CL medium pass 4CL__00017__sp_Q9S725_4CL2_ARATH
Phir2229640069920 Rosmarinic Acid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Phir2235680071420 Rosmarinic Acid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2249120076530 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2257870083450 Rosmarinic Acid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
Phir2272900120980 Rosmarinic Acid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2277780146960 Rosmarinic Acid 4CL low borderline 4CL__00001__sp_I3PB36_CNL_PETHY
Phir2279350158810 Rosmarinic Acid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH