PlantSME Plant secondary metabolism enzyme database

Plicanthus hirtellus (plicanthus_hirtellus)

Imported from atlas release summary for Plicanthus hirtellus.

705
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.54% Phenylpropanoid pathway 23.97% Alkaloid pathway 21.13% Flavonoid pathway 13.33% Rosmarinic acid pathway 10.92% Steroid pathway 6.1%
Family Distribution
C4H 8.38% C3'H/CYP98A 5.95% CYP76 5.48% 4CL 5.34% BAHD 4.63% IFS 3.7% POD 3.46% F3H 3.14%
Other Families 59.93%
More Families (96)
STR 59 2.76% BR6OX2/CYP85A2 59 2.76% NMT 57 2.67% T3O 46 2.15% DWF4/CYP90B1 46 2.15% H6H 45 2.11% F3'H/CYP75B 43 2.01% GS 38 1.78% TRI/TRII 38 1.78% IFR 34 1.59% IO 32 1.5% G8O/G8H 29 1.36% UGT 29 1.36% T16H 27 1.26% PAL 27 1.26% UFGT 26 1.22% PYKS 25 1.17% 7DLGT 25 1.17% CODM/T6ODM 23 1.08% SMT1/SMT2/SMT3 23 1.08% HCT 22 1.03% CAD 21 0.98% CHS 20 0.94% CSE 19 0.89% FNS 18 0.84% BR6OX1/CYP85A1 18 0.84% LAC 17 0.8% CAS 16 0.75% TPS 16 0.75% CYP719 15 0.7% F3'5'H/CYP75A 15 0.7% RAS 15 0.7% SGD 14 0.66% COR 13 0.61% NCS 13 0.61% COMT 13 0.61% CYP71 13 0.61% CNMT 12 0.56% ANR 12 0.56% SLS 11 0.51% 8HGO 9 0.42% F5H/CYP84A 9 0.42% CPD/CYP90A1 9 0.42% CYP90D1 9 0.42% XMT_MXMT_DXMT 8 0.37% PMT 8 0.37% CYP80B1 7 0.33% GES 7 0.33% SMO1/SMO2 7 0.33% ROT3/CYP90C1 7 0.33% GGPPS 7 0.33% 7DLH 6 0.28% MPO 6 0.28% ISY 6 0.28% CPR 6 0.28% MVK 6 0.28% AACT 6 0.28% DXS 6 0.28% FPPS 6 0.28% LAMT 5 0.23% CYP80F1 5 0.23% HPPR 5 0.23% DET2 5 0.23% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% DWF1 4 0.19% CYP51G1 4 0.19% HYD1 4 0.19% MVD 4 0.19% MCT/IspD 4 0.19% ADC 3 0.14% 16OMT 3 0.14% CCR 3 0.14% TAT 3 0.14% SQS/FDFT1 3 0.14% HDR/IspH 3 0.14% IDI 3 0.14% TDC 2 0.09% 6OMT_4OMT_SOMT 2 0.09% CHI 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF5 2 0.09% SQE 2 0.09% DXR 2 0.09% HMGR 2 0.09% MDS/IspF 2 0.09% TYDC_DDC 1 0.05% ODC 1 0.05% CPI1 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% HMGS 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 173 20 BAHD (67) View species results
Phenylpropanoid pathway 169 10 POD (62) View species results
Alkaloid pathway 149 19 TRI/TRII (23) View species results
Flavonoid pathway 94 9 4CL (21) View species results
Rosmarinic acid pathway 77 7 C4H (32) View species results
Steroid pathway 43 12 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 912 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 136 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Phir1272750007330 Alkaloid PYKS high pass
Phir1810032610 Alkaloid PYKS high pass
Phir2070047340 Alkaloid PYKS high pass
Phir2130053290 Alkaloid PYKS low borderline
Phir2181470060360 Alkaloid PYKS medium pass
Phir2261500088550 Alkaloid PYKS low borderline
Phir2268720104690 Alkaloid PYKS high pass
Phir2270570111210 Alkaloid PYKS low borderline
Phir2277220143490 Alkaloid PYKS medium pass
Phir2279660162330 Alkaloid PYKS low borderline
Phir2283000174520 Alkaloid PYKS medium pass
Phir2283710176430 Alkaloid PYKS high pass
Phir2387790186300 Alkaloid PYKS low borderline
Phir3150201340 Alkaloid PYKS high pass
Phir4120215000 Alkaloid PYKS low borderline
Phir4210219840 Alkaloid PYKS high pass
Phir4210219850 Alkaloid PYKS high pass
Phir4210219880 Alkaloid PYKS high pass
Phir4220220100 Alkaloid PYKS high pass
Phir4830231180 Alkaloid PYKS high pass
Phir610255250 Alkaloid PYKS high pass
Phir620257790 Alkaloid PYKS low borderline
Phir670265160 Alkaloid PYKS high pass
Phir810276820 Alkaloid PYKS high pass
Phir810276830 Alkaloid PYKS high pass