PlantSME Plant secondary metabolism enzyme database

Plicanthus hirtellus (plicanthus_hirtellus)

Imported from atlas release summary for Plicanthus hirtellus.

705
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.54% Phenylpropanoid pathway 23.97% Alkaloid pathway 21.13% Flavonoid pathway 13.33% Rosmarinic acid pathway 10.92% Steroid pathway 6.1%
Family Distribution
C4H 8.38% C3'H/CYP98A 5.95% CYP76 5.48% 4CL 5.34% BAHD 4.63% IFS 3.7% POD 3.46% F3H 3.14%
Other Families 59.93%
More Families (96)
STR 59 2.76% BR6OX2/CYP85A2 59 2.76% NMT 57 2.67% T3O 46 2.15% DWF4/CYP90B1 46 2.15% H6H 45 2.11% F3'H/CYP75B 43 2.01% GS 38 1.78% TRI/TRII 38 1.78% IFR 34 1.59% IO 32 1.5% G8O/G8H 29 1.36% UGT 29 1.36% T16H 27 1.26% PAL 27 1.26% UFGT 26 1.22% PYKS 25 1.17% 7DLGT 25 1.17% CODM/T6ODM 23 1.08% SMT1/SMT2/SMT3 23 1.08% HCT 22 1.03% CAD 21 0.98% CHS 20 0.94% CSE 19 0.89% FNS 18 0.84% BR6OX1/CYP85A1 18 0.84% LAC 17 0.8% CAS 16 0.75% TPS 16 0.75% CYP719 15 0.7% F3'5'H/CYP75A 15 0.7% RAS 15 0.7% SGD 14 0.66% COR 13 0.61% NCS 13 0.61% COMT 13 0.61% CYP71 13 0.61% CNMT 12 0.56% ANR 12 0.56% SLS 11 0.51% 8HGO 9 0.42% F5H/CYP84A 9 0.42% CPD/CYP90A1 9 0.42% CYP90D1 9 0.42% XMT_MXMT_DXMT 8 0.37% PMT 8 0.37% CYP80B1 7 0.33% GES 7 0.33% SMO1/SMO2 7 0.33% ROT3/CYP90C1 7 0.33% GGPPS 7 0.33% 7DLH 6 0.28% MPO 6 0.28% ISY 6 0.28% CPR 6 0.28% MVK 6 0.28% AACT 6 0.28% DXS 6 0.28% FPPS 6 0.28% LAMT 5 0.23% CYP80F1 5 0.23% HPPR 5 0.23% DET2 5 0.23% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% DWF1 4 0.19% CYP51G1 4 0.19% HYD1 4 0.19% MVD 4 0.19% MCT/IspD 4 0.19% ADC 3 0.14% 16OMT 3 0.14% CCR 3 0.14% TAT 3 0.14% SQS/FDFT1 3 0.14% HDR/IspH 3 0.14% IDI 3 0.14% TDC 2 0.09% 6OMT_4OMT_SOMT 2 0.09% CHI 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF5 2 0.09% SQE 2 0.09% DXR 2 0.09% HMGR 2 0.09% MDS/IspF 2 0.09% TYDC_DDC 1 0.05% ODC 1 0.05% CPI1 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% HMGS 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 173 20 BAHD (67) View species results
Phenylpropanoid pathway 169 10 POD (62) View species results
Alkaloid pathway 149 19 TRI/TRII (23) View species results
Flavonoid pathway 94 9 4CL (21) View species results
Rosmarinic acid pathway 77 7 C4H (32) View species results
Steroid pathway 43 12 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 912 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 136 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
Reset
Gene Pathway Family Confidence Status Best Target
Phir3730208660 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Phir420216670 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Phir4480224530 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Phir5040233840 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Phir5040233850 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Phir5040233860 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Phir5040233940 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
Phir5040233980 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Phir5040234180 Phenylpropanoid POD medium pass POD__00006__sp_O22850_GPX3_ARATH
Phir5040234710 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Phir5210236770 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Phir540239640 Phenylpropanoid POD low borderline POD__00019__sp_Q949Y3_PPA26_ARATH
Phir560245070 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Phir580248880 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Phir5950253000 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Phir5950253010 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Phir630258540 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Phir6460260140 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Phir6460260150 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Phir650261140 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Phir6820267870 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Phir690271610 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Phir700272470 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Phir930282210 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH