PlantSME Plant secondary metabolism enzyme database

Plicanthus hirtellus (plicanthus_hirtellus)

Imported from atlas release summary for Plicanthus hirtellus.

705
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.54% Phenylpropanoid pathway 23.97% Alkaloid pathway 21.13% Flavonoid pathway 13.33% Rosmarinic acid pathway 10.92% Steroid pathway 6.1%
Family Distribution
C4H 8.38% C3'H/CYP98A 5.95% CYP76 5.48% 4CL 5.34% BAHD 4.63% IFS 3.7% POD 3.46% F3H 3.14%
Other Families 59.93%
More Families (96)
STR 59 2.76% BR6OX2/CYP85A2 59 2.76% NMT 57 2.67% T3O 46 2.15% DWF4/CYP90B1 46 2.15% H6H 45 2.11% F3'H/CYP75B 43 2.01% GS 38 1.78% TRI/TRII 38 1.78% IFR 34 1.59% IO 32 1.5% G8O/G8H 29 1.36% UGT 29 1.36% T16H 27 1.26% PAL 27 1.26% UFGT 26 1.22% PYKS 25 1.17% 7DLGT 25 1.17% CODM/T6ODM 23 1.08% SMT1/SMT2/SMT3 23 1.08% HCT 22 1.03% CAD 21 0.98% CHS 20 0.94% CSE 19 0.89% FNS 18 0.84% BR6OX1/CYP85A1 18 0.84% LAC 17 0.8% CAS 16 0.75% TPS 16 0.75% CYP719 15 0.7% F3'5'H/CYP75A 15 0.7% RAS 15 0.7% SGD 14 0.66% COR 13 0.61% NCS 13 0.61% COMT 13 0.61% CYP71 13 0.61% CNMT 12 0.56% ANR 12 0.56% SLS 11 0.51% 8HGO 9 0.42% F5H/CYP84A 9 0.42% CPD/CYP90A1 9 0.42% CYP90D1 9 0.42% XMT_MXMT_DXMT 8 0.37% PMT 8 0.37% CYP80B1 7 0.33% GES 7 0.33% SMO1/SMO2 7 0.33% ROT3/CYP90C1 7 0.33% GGPPS 7 0.33% 7DLH 6 0.28% MPO 6 0.28% ISY 6 0.28% CPR 6 0.28% MVK 6 0.28% AACT 6 0.28% DXS 6 0.28% FPPS 6 0.28% LAMT 5 0.23% CYP80F1 5 0.23% HPPR 5 0.23% DET2 5 0.23% BBE 4 0.19% DFR 4 0.19% ANS/LDOX 4 0.19% DWF1 4 0.19% CYP51G1 4 0.19% HYD1 4 0.19% MVD 4 0.19% MCT/IspD 4 0.19% ADC 3 0.14% 16OMT 3 0.14% CCR 3 0.14% TAT 3 0.14% SQS/FDFT1 3 0.14% HDR/IspH 3 0.14% IDI 3 0.14% TDC 2 0.09% 6OMT_4OMT_SOMT 2 0.09% CHI 2 0.09% CCoAOMT 2 0.09% FK 2 0.09% DWF5 2 0.09% SQE 2 0.09% DXR 2 0.09% HMGR 2 0.09% MDS/IspF 2 0.09% TYDC_DDC 1 0.05% ODC 1 0.05% CPI1 1 0.05% DWF7 1 0.05% HDS/IspG 1 0.05% HMGS 1 0.05% CMK/IspE 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 173 20 BAHD (67) View species results
Phenylpropanoid pathway 169 10 POD (62) View species results
Alkaloid pathway 149 19 TRI/TRII (23) View species results
Flavonoid pathway 94 9 4CL (21) View species results
Rosmarinic acid pathway 77 7 C4H (32) View species results
Steroid pathway 43 12 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 912 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 136 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Phir2267400100230 Flavonoid IFS medium borderline
Phir2268880105230 Flavonoid IFS medium borderline
Phir2270090109370 Flavonoid IFS medium borderline
Phir2270530110990 Flavonoid IFS medium borderline
Phir2271890115810 Flavonoid IFS low borderline
Phir2271890115820 Flavonoid IFS low borderline
Phir2272620119550 Flavonoid IFS medium borderline
Phir2273100122110 Flavonoid IFS medium borderline
Phir2273300123130 Flavonoid IFS low borderline
Phir2275280131830 Flavonoid IFS low borderline
Phir2275980136520 Flavonoid IFS low borderline
Phir2276540139680 Flavonoid IFS medium borderline
Phir2276540139790 Flavonoid IFS medium borderline
Phir2276540139960 Flavonoid IFS medium borderline
Phir2278750154690 Flavonoid IFS medium borderline
Phir2279840162820 Flavonoid IFS medium borderline
Phir2281810170100 Flavonoid IFS low borderline
Phir2281810170130 Flavonoid IFS low borderline
Phir2282020171350 Flavonoid IFS low borderline
Phir2283380175340 Flavonoid IFS low borderline
Phir2295770181480 Flavonoid IFS low borderline
Phir2295800181560 Flavonoid IFS low borderline
Phir2421540187060 Flavonoid IFS medium borderline
Phir2421570187110 Flavonoid IFS medium borderline
Phir2800195920 Flavonoid IFS low borderline
Phir2910196800 Flavonoid IFS low borderline
Phir2960197800 Flavonoid IFS medium borderline
Phir2960197810 Flavonoid IFS medium borderline
Phir3110200550 Flavonoid IFS low borderline
Phir3230202480 Flavonoid IFS low borderline
Phir3240203070 Flavonoid IFS medium borderline
Phir3730208710 Flavonoid IFS low borderline
Phir3900210840 Flavonoid IFS medium borderline
Phir3900210860 Flavonoid IFS medium borderline
Phir3900210880 Flavonoid IFS medium borderline
Phir3900211030 Flavonoid IFS low borderline
Phir3950211620 Flavonoid IFS low borderline
Phir4000212660 Flavonoid IFS medium borderline
Phir4030213460 Flavonoid IFS low borderline
Phir4060214330 Flavonoid IFS medium borderline
Phir420218220 Flavonoid IFS medium borderline
Phir4280221200 Flavonoid IFS medium borderline
Phir4450223030 Flavonoid IFS low borderline
Phir4480224790 Flavonoid IFS low borderline
Phir4590226640 Flavonoid IFS low borderline
Phir4670227890 Flavonoid IFS low borderline
Phir4790229790 Flavonoid IFS medium borderline
Phir5510242250 Flavonoid IFS medium borderline
Phir560244000 Flavonoid IFS low borderline
Phir5930252870 Flavonoid IFS low borderline