PlantSME Plant secondary metabolism enzyme database

Pogonatum microstomum (pogonatum_microstomum)

Imported from atlas release summary for Pogonatum microstomum.

602
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.25% Terpenoid pathway 24.42% Alkaloid pathway 17.94% Rosmarinic acid pathway 13.62% Flavonoid pathway 12.13% Steroid pathway 5.65%
Family Distribution
C4H 8.33% C3'H/CYP98A 6.94% CYP76 5.9% BAHD 4.92% 4CL 4.51% POD 4.11% NMT 3.64% IFS 3.24%
Other Families 58.42%
More Families (95)
T3O 49 2.83% PAL 48 2.78% BR6OX2/CYP85A2 47 2.72% F3'H/CYP75B 45 2.6% DWF4/CYP90B1 43 2.49% STR 42 2.43% F3H 38 2.2% IFR 31 1.79% PYKS 28 1.62% GS 28 1.62% UGT 26 1.5% T16H 25 1.45% 7DLGT 25 1.45% UFGT 23 1.33% CODM/T6ODM 22 1.27% IO 20 1.16% H6H 20 1.16% G8O/G8H 19 1.1% CYP71 19 1.1% SGD 17 0.98% CHS 17 0.98% F3'5'H/CYP75A 16 0.93% SMT1/SMT2/SMT3 16 0.93% COMT 15 0.87% LAC 15 0.87% TRI/TRII 14 0.81% CAS 13 0.75% FNS 12 0.69% CAD 12 0.69% HCT 12 0.69% BR6OX1/CYP85A1 12 0.69% RAS 11 0.64% CSE 10 0.58% 7DLH 9 0.52% SLS 9 0.52% DFR 9 0.52% BBE 8 0.46% CNMT 8 0.46% CCR 8 0.46% CPD/CYP90A1 8 0.46% CYP80B1 7 0.4% MPO 7 0.4% ANR 7 0.4% CPR 7 0.4% CYP90D1 7 0.4% AACT 7 0.4% 8HGO 6 0.35% CYP719 6 0.35% 16OMT 5 0.29% PMT 5 0.29% F5H/CYP84A 5 0.29% SQS/FDFT1 5 0.29% ROT3/CYP90C1 5 0.29% GGPPS 5 0.29% COR 4 0.23% TAT 4 0.23% DET2 4 0.23% DXS 4 0.23% TDC 3 0.17% NCS 3 0.17% ANS/LDOX 3 0.17% CHI 3 0.17% CCoAOMT 3 0.17% SMO1/SMO2 3 0.17% LAMT 2 0.12% ADC 2 0.12% ODC 2 0.12% ISY 2 0.12% DWF1 2 0.12% DWF5 2 0.12% MVD 2 0.12% HMGR 2 0.12% HDS/IspG 2 0.12% MVK 2 0.12% IDI 2 0.12% FPPS 2 0.12% CYP80F1 1 0.06% XMT_MXMT_DXMT 1 0.06% TYDC_DDC 1 0.06% FLS 1 0.06% HPPR 1 0.06% SQE 1 0.06% CYP51G1 1 0.06% HYD1 1 0.06% FK 1 0.06% DWF7 1 0.06% CPI1 1 0.06% HDR/IspH 1 0.06% HMGS 1 0.06% MDS/IspF 1 0.06% MCT/IspD 1 0.06% DXR 1 0.06% PMK 1 0.06% CMK/IspE 1 0.06% TPS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 158 11 POD (65) View species results
Terpenoid pathway 147 18 BAHD (58) View species results
Alkaloid pathway 108 16 PYKS (16) View species results
Rosmarinic acid pathway 82 7 C4H (38) View species results
Flavonoid pathway 73 7 UFGT (23) View species results
Steroid pathway 34 13 CAS (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 775 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 108 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Pmic1118790007820 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pmic1141960020230 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Pmic1160850075410 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
Pmic1166310148520 Phenylpropanoid CAD low borderline CAD__00004__sp_B5LAT8_CAD1_CAPAN
Pmic1166950168480 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Pmic1167090173300 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Pmic1167120175190 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Pmic1168260208810 Phenylpropanoid CAD medium pass CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Pmic751890229190 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pmic829800232100 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Pmic896990235480 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Pmic898150235780 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR