Polygala tenuifolia (polygala_tenuifolia)
Imported from atlas release summary for Polygala tenuifolia.
1845
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1845
Candidate Genes
BAHD
7.86%
C4H
5.22%
C3'H/CYP98A
4.93%
UGT
4.89%
POD
4.67%
4CL
4.28%
7DLGT
4.16%
UFGT
4.14%
Other Families
59.85%
More Families (96)
IFS
143
3.46%
CYP76
126
3.05%
T3O
110
2.66%
F3H
109
2.64%
NMT
105
2.54%
DWF4/CYP90B1
85
2.06%
STR
78
1.89%
CODM/T6ODM
77
1.86%
F3'H/CYP75B
66
1.6%
TAT
66
1.6%
BR6OX2/CYP85A2
64
1.55%
LAC
62
1.5%
HCT
55
1.33%
SMT1/SMT2/SMT3
55
1.33%
RAS
48
1.16%
H6H
47
1.14%
CAD
47
1.14%
CSE
45
1.09%
COMT
43
1.04%
TRI/TRII
42
1.02%
IFR
42
1.02%
PMT
39
0.94%
CYP71
39
0.94%
SGD
37
0.89%
PYKS
37
0.89%
IO
34
0.82%
T16H
32
0.77%
GS
30
0.73%
CAS
30
0.73%
16OMT
28
0.68%
COR
27
0.65%
PAL
27
0.65%
CYP90D1
26
0.63%
ROT3/CYP90C1
23
0.56%
7DLH
22
0.53%
SLS
22
0.53%
F5H/CYP84A
21
0.51%
TPS
21
0.51%
G8O/G8H
20
0.48%
GES
20
0.48%
FNS
20
0.48%
BBE
19
0.46%
8HGO
17
0.41%
ANS/LDOX
17
0.41%
ANR
16
0.39%
CCR
16
0.39%
CPD/CYP90A1
16
0.39%
BR6OX1/CYP85A1
16
0.39%
LAMT
14
0.34%
NCS
13
0.31%
F3'5'H/CYP75A
12
0.29%
CPR
12
0.29%
CYP51G1
12
0.29%
MPO
11
0.27%
CNMT
11
0.27%
GGPPS
11
0.27%
DFR
10
0.24%
ISY
9
0.22%
CHS
9
0.22%
SQE
9
0.22%
DXS
9
0.22%
CYP719
8
0.19%
CHI
8
0.19%
DET2
8
0.19%
FPPS
8
0.19%
AACT
8
0.19%
XMT_MXMT_DXMT
6
0.15%
CCoAOMT
6
0.15%
HPPR
6
0.15%
SQS/FDFT1
6
0.15%
MVK
6
0.15%
SMO1/SMO2
5
0.12%
HMGR
5
0.12%
HMGS
5
0.12%
MVD
5
0.12%
CMK/IspE
5
0.12%
ADC
4
0.1%
CYP80B1
4
0.1%
TYDC_DDC
4
0.1%
DWF1
4
0.1%
IDI
4
0.1%
ODC
3
0.07%
CPI1
3
0.07%
MCT/IspD
3
0.07%
HDS/IspG
3
0.07%
HDR/IspH
3
0.07%
TDC
2
0.05%
CYP80F1
2
0.05%
HYD1
2
0.05%
DWF7
2
0.05%
PMK
2
0.05%
DXR
2
0.05%
FLS
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 566 | 19 | BAHD (260) | View species results |
| Phenylpropanoid pathway | 408 | 12 | POD (178) | View species results |
| Alkaloid pathway | 362 | 23 | 7DLGT (71) | View species results |
| Flavonoid pathway | 238 | 11 | UFGT (157) | View species results |
| Rosmarinic acid pathway | 177 | 7 | TAT (50) | View species results |
| Steroid pathway | 94 | 13 | SMT1/SMT2/SMT3 (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1323 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 428 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| polygala_tenuifolia_Pt11G00460 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| polygala_tenuifolia_Pt12G00662 | Phenylpropanoid | CCR | medium | borderline | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| polygala_tenuifolia_Pt12G01096 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| polygala_tenuifolia_Pt12G01235 | Phenylpropanoid | CCR | medium | borderline | CCR__00004__sp_G7JEE5_CCR2_MEDTR |
| polygala_tenuifolia_Pt13G00952 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| polygala_tenuifolia_Pt14G00696 | Phenylpropanoid | CCR | medium | borderline | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| polygala_tenuifolia_Pt15G02232 | Phenylpropanoid | CCR | medium | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| polygala_tenuifolia_Pt17G00172 | Phenylpropanoid | CCR | medium | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| polygala_tenuifolia_Pt17G01475 | Phenylpropanoid | CCR | low | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| polygala_tenuifolia_Pt18G00443 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| polygala_tenuifolia_Pt1G00307 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| polygala_tenuifolia_Pt2G01949 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| polygala_tenuifolia_Pt3G00834 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| polygala_tenuifolia_Pt3G01260 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| polygala_tenuifolia_Pt4G00934 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| polygala_tenuifolia_Pt6G01000 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |