PlantSME Plant secondary metabolism enzyme database

Polygala tenuifolia (polygala_tenuifolia)

Imported from atlas release summary for Polygala tenuifolia.

1845
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.68% Phenylpropanoid pathway 22.11% Alkaloid pathway 19.62% Flavonoid pathway 12.9% Rosmarinic acid pathway 9.59% Steroid pathway 5.09%
Family Distribution
BAHD 7.86% C4H 5.22% C3'H/CYP98A 4.93% UGT 4.89% POD 4.67% 4CL 4.28% 7DLGT 4.16% UFGT 4.14%
Other Families 59.85%
More Families (96)
IFS 143 3.46% CYP76 126 3.05% T3O 110 2.66% F3H 109 2.64% NMT 105 2.54% DWF4/CYP90B1 85 2.06% STR 78 1.89% CODM/T6ODM 77 1.86% F3'H/CYP75B 66 1.6% TAT 66 1.6% BR6OX2/CYP85A2 64 1.55% LAC 62 1.5% HCT 55 1.33% SMT1/SMT2/SMT3 55 1.33% RAS 48 1.16% H6H 47 1.14% CAD 47 1.14% CSE 45 1.09% COMT 43 1.04% TRI/TRII 42 1.02% IFR 42 1.02% PMT 39 0.94% CYP71 39 0.94% SGD 37 0.89% PYKS 37 0.89% IO 34 0.82% T16H 32 0.77% GS 30 0.73% CAS 30 0.73% 16OMT 28 0.68% COR 27 0.65% PAL 27 0.65% CYP90D1 26 0.63% ROT3/CYP90C1 23 0.56% 7DLH 22 0.53% SLS 22 0.53% F5H/CYP84A 21 0.51% TPS 21 0.51% G8O/G8H 20 0.48% GES 20 0.48% FNS 20 0.48% BBE 19 0.46% 8HGO 17 0.41% ANS/LDOX 17 0.41% ANR 16 0.39% CCR 16 0.39% CPD/CYP90A1 16 0.39% BR6OX1/CYP85A1 16 0.39% LAMT 14 0.34% NCS 13 0.31% F3'5'H/CYP75A 12 0.29% CPR 12 0.29% CYP51G1 12 0.29% MPO 11 0.27% CNMT 11 0.27% GGPPS 11 0.27% DFR 10 0.24% ISY 9 0.22% CHS 9 0.22% SQE 9 0.22% DXS 9 0.22% CYP719 8 0.19% CHI 8 0.19% DET2 8 0.19% FPPS 8 0.19% AACT 8 0.19% XMT_MXMT_DXMT 6 0.15% CCoAOMT 6 0.15% HPPR 6 0.15% SQS/FDFT1 6 0.15% MVK 6 0.15% SMO1/SMO2 5 0.12% HMGR 5 0.12% HMGS 5 0.12% MVD 5 0.12% CMK/IspE 5 0.12% ADC 4 0.1% CYP80B1 4 0.1% TYDC_DDC 4 0.1% DWF1 4 0.1% IDI 4 0.1% ODC 3 0.07% CPI1 3 0.07% MCT/IspD 3 0.07% HDS/IspG 3 0.07% HDR/IspH 3 0.07% TDC 2 0.05% CYP80F1 2 0.05% HYD1 2 0.05% DWF7 2 0.05% PMK 2 0.05% DXR 2 0.05% FLS 1 0.02% FK 1 0.02% DWF5 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 566 19 BAHD (260) View species results
Phenylpropanoid pathway 408 12 POD (178) View species results
Alkaloid pathway 362 23 7DLGT (71) View species results
Flavonoid pathway 238 11 UFGT (157) View species results
Rosmarinic acid pathway 177 7 TAT (50) View species results
Steroid pathway 94 13 SMT1/SMT2/SMT3 (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1323 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 428 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status Best Target
polygala_tenuifolia_Pt12G00662 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt13G00062 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt13G01832 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt14G00696 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt15G02232 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt17G00172 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt18G02062 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_Pt1G00307 Flavonoid DFR medium borderline DFR__00003__sp_Q9XES5_DFRA_MALDO
polygala_tenuifolia_Pt6G02256 Flavonoid DFR low borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
polygala_tenuifolia_PtUnG_0319G00003 Flavonoid DFR medium borderline DFR__00002__sp_Q84KP0_DFRA_PYRCO