PlantSME Plant secondary metabolism enzyme database

Populus euphratica (populus_euphratica)

Imported from atlas release summary for Populus euphratica.

2051
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 23.7% Phenylpropanoid pathway 19.7% Flavonoid pathway 13.16% Rosmarinic acid pathway 6.58% Steroid pathway 6.0%
Family Distribution
BAHD 6.29% UGT 5.38% C4H 4.92% 7DLGT 4.81% C3'H/CYP98A 4.61% UFGT 4.28% 4CL 4.06% POD 3.62%
Other Families 62.03%
More Families (98)
IFS 149 3.29% CYP76 124 2.74% F3H 123 2.71% T3O 120 2.65% NMT 114 2.51% DWF4/CYP90B1 88 1.94% STR 80 1.76% CAD 74 1.63% TPS 66 1.46% H6H 64 1.41% CODM/T6ODM 64 1.41% GES 64 1.41% TRI/TRII 62 1.37% CAS 62 1.37% BR6OX2/CYP85A2 62 1.37% SMT1/SMT2/SMT3 62 1.37% F3'H/CYP75B 59 1.3% LAC 59 1.3% HCT 59 1.3% CSE 53 1.17% CYP90D1 51 1.13% IFR 47 1.04% CYP71 46 1.01% BBE 43 0.95% COMT 41 0.9% GS 38 0.84% RAS 38 0.84% PMT 37 0.82% PYKS 35 0.77% SGD 34 0.75% G8O/G8H 33 0.73% CCR 33 0.73% TAT 33 0.73% FNS 32 0.71% 16OMT 29 0.64% IO 29 0.64% T16H 29 0.64% NCS 27 0.6% F5H/CYP84A 27 0.6% SLS 26 0.57% ANR 26 0.57% 7DLH 24 0.53% F3'5'H/CYP75A 24 0.53% PAL 24 0.53% CPD/CYP90A1 23 0.51% 8HGO 19 0.42% DFR 18 0.4% BR6OX1/CYP85A1 18 0.4% LAMT 17 0.38% ROT3/CYP90C1 17 0.38% ANS/LDOX 15 0.33% SQE 15 0.33% AACT 13 0.29% COR 12 0.26% CNMT 12 0.26% CHS 12 0.26% CPR 11 0.24% SQS/FDFT1 11 0.24% DET2 11 0.24% GGPPS 11 0.24% MPO 10 0.22% FPPS 10 0.22% DXS 10 0.22% ISY 8 0.18% CYP719 8 0.18% CYP80B1 8 0.18% HMGR 8 0.18% MVD 8 0.18% CCoAOMT 7 0.15% HPPR 7 0.15% CYP51G1 7 0.15% MVK 7 0.15% SMO1/SMO2 5 0.11% TYDC_DDC 4 0.09% TDC 4 0.09% CHI 4 0.09% DXR 4 0.09% CYP80F1 3 0.07% ODC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% DWF7 3 0.07% DWF5 3 0.07% MCT/IspD 3 0.07% MDS/IspF 3 0.07% CMK/IspE 3 0.07% HYD1 2 0.04% DWF1 2 0.04% PMK 2 0.04% HMGS 2 0.04% IDI 2 0.04% HDS/IspG 2 0.04% HDR/IspH 2 0.04% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 633 21 UGT (226) View species results
Alkaloid pathway 486 23 7DLGT (101) View species results
Phenylpropanoid pathway 404 11 POD (153) View species results
Flavonoid pathway 270 12 UFGT (167) View species results
Rosmarinic acid pathway 135 7 4CL (45) View species results
Steroid pathway 123 13 CAS (51) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1407 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 382 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
populus_euphratica_GWHPAAYU005430 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH
populus_euphratica_GWHPAAYU008926 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
populus_euphratica_GWHPAAYU013398 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
populus_euphratica_GWHPAAYU015666 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
populus_euphratica_GWHPAAYU015667 Rosmarinic Acid CPR medium pass CPR__00006__sp_Q7X7K8_NCPR1_ORYSJ
populus_euphratica_GWHPAAYU015668 Rosmarinic Acid CPR medium pass CPR__00005__sp_Q653S9_NCPR3_ORYSJ
populus_euphratica_GWHPAAYU024054 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
populus_euphratica_GWHPAAYU025974 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
populus_euphratica_GWHPAAYU026577 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH
populus_euphratica_GWHPAAYU026582 Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH
populus_euphratica_GWHPAAYU028651 Rosmarinic Acid CPR medium pass CPR__00001__sp_A0A2U1LIM9_NCPR1_ARTAN