PlantSME Plant secondary metabolism enzyme database

Populus glandulosa x p.alba (populus_glandulosa_x_p_alba)

Imported from atlas release summary for Populus glandulosa x p.alba.

4612
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.68% Alkaloid pathway 23.27% Phenylpropanoid pathway 17.22% Flavonoid pathway 13.81% Rosmarinic acid pathway 8.41% Steroid pathway 5.62%
Family Distribution
C4H 6.07% UGT 5.81% BAHD 5.7% C3'H/CYP98A 5.37% 7DLGT 4.72% UFGT 4.38% IFS 4.1% CYP76 3.76%
Other Families 60.1%
More Families (97)
4CL 366 3.42% T3O 365 3.41% POD 328 3.06% F3H 268 2.5% NMT 232 2.17% DWF4/CYP90B1 230 2.15% CAD 177 1.65% BR6OX2/CYP85A2 177 1.65% STR 168 1.57% F3'H/CYP75B 161 1.5% H6H 152 1.42% BBE 141 1.32% CODM/T6ODM 136 1.27% SGD 131 1.22% CAS 128 1.19% CYP71 128 1.19% TRI/TRII 121 1.13% LAC 120 1.12% HCT 120 1.12% SMT1/SMT2/SMT3 117 1.09% IO 112 1.05% CYP90D1 112 1.05% TPS 101 0.94% GES 98 0.91% IFR 94 0.88% PYKS 87 0.81% RAS 87 0.81% GS 80 0.75% TAT 79 0.74% CSE 78 0.73% G8O/G8H 77 0.72% COMT 74 0.69% LAMT 67 0.63% PMT 67 0.63% CCR 66 0.62% F5H/CYP84A 66 0.62% FNS 64 0.6% SLS 63 0.59% 16OMT 61 0.57% ANR 61 0.57% CPD/CYP90A1 58 0.54% T16H 51 0.48% BR6OX1/CYP85A1 47 0.44% 8HGO 45 0.42% F3'5'H/CYP75A 45 0.42% DFR 43 0.4% NCS 42 0.39% 7DLH 40 0.37% PAL 36 0.34% ISY 34 0.32% CNMT 32 0.3% ROT3/CYP90C1 32 0.3% SQE 32 0.3% CHS 31 0.29% CYP51G1 29 0.27% DET2 28 0.26% SQS/FDFT1 27 0.25% ANS/LDOX 26 0.24% COR 25 0.23% CYP719 25 0.23% AACT 24 0.22% MPO 21 0.2% CPR 21 0.2% HPPR 20 0.19% FPPS 20 0.19% GGPPS 19 0.18% HMGR 16 0.15% CYP80B1 15 0.14% CCoAOMT 15 0.14% SMO1/SMO2 15 0.14% DXS 15 0.14% MVK 14 0.13% MVD 13 0.12% TYDC_DDC 11 0.1% TDC 10 0.09% MCT/IspD 8 0.07% CMK/IspE 7 0.07% ODC 6 0.06% CHI 6 0.06% DWF5 6 0.06% HDS/IspG 6 0.06% HDR/IspH 6 0.06% CYP80F1 5 0.05% XMT_MXMT_DXMT 5 0.05% HYD1 5 0.05% DWF7 5 0.05% DXR 5 0.05% IDI 5 0.05% 6OMT_4OMT_SOMT 4 0.04% DWF1 4 0.04% PMK 4 0.04% HMGS 4 0.04% MDS/IspF 4 0.04% ADC 2 0.02% FK 2 0.02% CPI1 2 0.02% FLS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1461 20 UGT (565) View species results
Alkaloid pathway 1073 23 7DLGT (262) View species results
Phenylpropanoid pathway 794 13 POD (308) View species results
Flavonoid pathway 637 14 UFGT (433) View species results
Rosmarinic acid pathway 388 7 C4H (145) View species results
Steroid pathway 259 13 CAS (115) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3905 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 818 BAHD, HCT, RAS
Identification Result List
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Current family filter: MCT/IspD
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Gene Pathway Family Confidence Status
PglaA01G0029230.1 Terpenoid MCT/IspD low borderline
PglaA03G0015090.1 Terpenoid MCT/IspD low borderline
PglaA04G0000570.1 Terpenoid MCT/IspD high pass
PglaG01G0030510.1 Terpenoid MCT/IspD low borderline
PglaG01G0030510.2 Terpenoid MCT/IspD low borderline
PglaG03G0016040.1 Terpenoid MCT/IspD low borderline
PglaG04G0000590.1 Terpenoid MCT/IspD high pass
PglaG08G0023950.1 Terpenoid MCT/IspD low borderline