PlantSME Plant secondary metabolism enzyme database

Populus pruinosa (populus_pruinosa)

Imported from atlas release summary for Populus pruinosa.

1878
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.13% Alkaloid pathway 22.63% Phenylpropanoid pathway 18.8% Flavonoid pathway 14.64% Rosmarinic acid pathway 9.05% Steroid pathway 5.75%
Family Distribution
C3'H/CYP98A 5.89% C4H 5.78% BAHD 5.48% UGT 5.14% 7DLGT 4.69% UFGT 4.47% IFS 4.19% CYP76 3.81%
Other Families 60.55%
More Families (98)
T3O 176 3.78% 4CL 172 3.7% POD 159 3.42% F3H 119 2.56% DWF4/CYP90B1 112 2.41% NMT 103 2.21% STR 81 1.74% F3'H/CYP75B 78 1.68% BR6OX2/CYP85A2 75 1.61% CODM/T6ODM 66 1.42% CAD 66 1.42% H6H 63 1.35% TRI/TRII 60 1.29% BBE 59 1.27% LAC 59 1.27% HCT 55 1.18% SMT1/SMT2/SMT3 53 1.14% CYP90D1 52 1.12% CYP71 50 1.08% CAS 47 1.01% IFR 45 0.97% CSE 43 0.92% IO 41 0.88% T16H 37 0.8% TAT 37 0.8% GES 36 0.77% PYKS 36 0.77% GS 34 0.73% TPS 34 0.73% CPD/CYP90A1 33 0.71% COMT 32 0.69% RAS 32 0.69% CCR 31 0.67% PMT 29 0.62% SGD 29 0.62% ANR 26 0.56% F5H/CYP84A 25 0.54% DFR 23 0.49% LAMT 22 0.47% SLS 22 0.47% NCS 22 0.47% FNS 22 0.47% G8O/G8H 21 0.45% F3'5'H/CYP75A 21 0.45% 16OMT 19 0.41% 7DLH 18 0.39% PAL 18 0.39% BR6OX1/CYP85A1 17 0.37% 8HGO 16 0.34% SQE 14 0.3% ISY 13 0.28% CHS 13 0.28% ANS/LDOX 13 0.28% SQS/FDFT1 13 0.28% FPPS 13 0.28% COR 11 0.24% CNMT 11 0.24% ROT3/CYP90C1 11 0.24% CYP51G1 11 0.24% DET2 11 0.24% MPO 10 0.22% CYP719 9 0.19% AACT 9 0.19% DXS 9 0.19% HPPR 8 0.17% SMO1/SMO2 8 0.17% GGPPS 8 0.17% CCoAOMT 7 0.15% CPR 7 0.15% HMGR 7 0.15% 6OMT_4OMT_SOMT 6 0.13% MVD 6 0.13% MVK 6 0.13% CYP80B1 4 0.09% TDC 4 0.09% ODC 3 0.06% CHI 3 0.06% DWF5 3 0.06% DXR 3 0.06% MCT/IspD 3 0.06% CMK/IspE 3 0.06% TYDC_DDC 2 0.04% CYP80F1 2 0.04% FLS 2 0.04% DWF7 2 0.04% DWF1 2 0.04% HYD1 2 0.04% IDI 2 0.04% MDS/IspF 2 0.04% GPPS 2 0.04% HDS/IspG 2 0.04% PMK 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% XMT_MXMT_DXMT 1 0.02% ADC 1 0.02% FK 1 0.02% CPI1 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 547 20 UGT (214) View species results
Alkaloid pathway 425 23 7DLGT (99) View species results
Phenylpropanoid pathway 353 11 POD (138) View species results
Flavonoid pathway 275 10 UFGT (186) View species results
Rosmarinic acid pathway 170 7 C4H (68) View species results
Steroid pathway 108 14 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1730 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 342 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
Ppruscaffold14380056110 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Ppruscaffold15440064760 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Ppruscaffold20130106630 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
Ppruscaffold24570144620 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Ppruscaffold24570144630 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Ppruscaffold2550151460 Flavonoid CHS low borderline CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Ppruscaffold26900157220 Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
Ppruscaffold33200175480 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Ppruscaffold4220212110 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Ppruscaffold479420226270 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Ppruscaffold5720246800 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Ppruscaffold5720246810 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Ppruscaffold5720248570 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA