PlantSME Plant secondary metabolism enzyme database

Populus tremula x alba (populus_tremula_x_alba)

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Imported from atlas release summary for Populus tremula x alba.

1994
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.24% Alkaloid pathway 22.32% Phenylpropanoid pathway 18.71% Flavonoid pathway 14.04% Rosmarinic acid pathway 8.83% Steroid pathway 5.87%
Family Distribution
BAHD 6.05% C3'H/CYP98A 5.94% C4H 5.81% UGT 4.7% 7DLGT 4.4% UFGT 4.38% IFS 4.16% CYP76 3.65%
Other Families 60.91%
More Families (96)
T3O 164 3.52% POD 155 3.33% 4CL 150 3.22% F3H 124 2.66% DWF4/CYP90B1 113 2.42% NMT 93 2.0% CAD 80 1.72% STR 77 1.65% BR6OX2/CYP85A2 75 1.61% F3'H/CYP75B 70 1.5% BBE 67 1.44% H6H 64 1.37% HCT 64 1.37% CODM/T6ODM 63 1.35% SMT1/SMT2/SMT3 57 1.22% TRI/TRII 55 1.18% CAS 55 1.18% CYP71 55 1.18% SGD 53 1.14% CYP90D1 53 1.14% LAC 49 1.05% RAS 44 0.94% IFR 42 0.9% GES 41 0.88% PYKS 40 0.86% TPS 40 0.86% IO 37 0.79% CCR 37 0.79% TAT 37 0.79% GS 36 0.77% ANR 36 0.77% COMT 36 0.77% CSE 35 0.75% SLS 30 0.64% 16OMT 30 0.64% G8O/G8H 28 0.6% PMT 27 0.58% FNS 26 0.56% BR6OX1/CYP85A1 25 0.54% T16H 23 0.49% NCS 23 0.49% DFR 23 0.49% 7DLH 21 0.45% F5H/CYP84A 20 0.43% CPD/CYP90A1 20 0.43% 8HGO 19 0.41% LAMT 18 0.39% F3'5'H/CYP75A 18 0.39% PAL 18 0.39% CNMT 15 0.32% CHS 15 0.32% ISY 14 0.3% CYP51G1 14 0.3% MPO 11 0.24% COR 11 0.24% ANS/LDOX 11 0.24% DET2 11 0.24% SQS/FDFT1 10 0.21% SQE 10 0.21% AACT 10 0.21% GGPPS 10 0.21% HPPR 9 0.19% CPR 9 0.19% CYP719 7 0.15% ROT3/CYP90C1 7 0.15% SMO1/SMO2 7 0.15% FPPS 7 0.15% HMGR 7 0.15% MVK 7 0.15% MVD 7 0.15% DXS 6 0.13% TYDC_DDC 5 0.11% CCoAOMT 5 0.11% TDC 4 0.09% CYP80B1 4 0.09% CMK/IspE 4 0.09% CHI 3 0.06% MCT/IspD 3 0.06% ODC 2 0.04% XMT_MXMT_DXMT 2 0.04% HYD1 2 0.04% DWF7 2 0.04% DWF5 2 0.04% DWF1 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% PMK 2 0.04% HDR/IspH 2 0.04% HDS/IspG 2 0.04% DXR 2 0.04% CYP80F1 1 0.02% ADC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% CPI1 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 603 19 BAHD (228) View species results
Alkaloid pathway 445 21 7DLGT (101) View species results
Phenylpropanoid pathway 373 12 POD (149) View species results
Flavonoid pathway 280 10 UFGT (194) View species results
Rosmarinic acid pathway 176 7 C4H (66) View species results
Steroid pathway 117 13 CAS (50) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1697 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 390 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
populus_tremula_x_alba_PtXaTreH.09G001100.1.p Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
populus_tremula_x_alba_PtXaTreH.09G013600.1.p Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
populus_tremula_x_alba_PtXaTreH.09G043300.1.p Terpenoid BAHD medium pass BAHD__00040__sp_Q41745_LPAT_MAIZE
populus_tremula_x_alba_PtXaTreH.09G043700.1.p Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
populus_tremula_x_alba_PtXaTreH.09G043800.1.p Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
populus_tremula_x_alba_PtXaTreH.09G043900.1.p Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
populus_tremula_x_alba_PtXaTreH.09G044600.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
populus_tremula_x_alba_PtXaTreH.09G044700.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
populus_tremula_x_alba_PtXaTreH.09G055300.1.p Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
populus_tremula_x_alba_PtXaTreH.09G060300.1.p Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
populus_tremula_x_alba_PtXaTreH.09G093400.1.p Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
populus_tremula_x_alba_PtXaTreH.09G120300.1.p Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
populus_tremula_x_alba_PtXaTreH.09G126700.1.p Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
populus_tremula_x_alba_PtXaTreH.10G003800.1.p Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
populus_tremula_x_alba_PtXaTreH.10G009700.1.p Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
populus_tremula_x_alba_PtXaTreH.10G041800.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
populus_tremula_x_alba_PtXaTreH.10G041900.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
populus_tremula_x_alba_PtXaTreH.10G042000.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
populus_tremula_x_alba_PtXaTreH.10G042100.1.p Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
populus_tremula_x_alba_PtXaTreH.10G042200.1.p Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
populus_tremula_x_alba_PtXaTreH.10G044000.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
populus_tremula_x_alba_PtXaTreH.10G044100.1.p Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
populus_tremula_x_alba_PtXaTreH.10G044200.1.p Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
populus_tremula_x_alba_PtXaTreH.10G124200.1.p Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
populus_tremula_x_alba_PtXaTreH.10G134700.1.p Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
populus_tremula_x_alba_PtXaTreH.10G148800.1.p Terpenoid BAHD medium pass BAHD__00030__sp_O80816_GLC_ARATH
populus_tremula_x_alba_PtXaTreH.10G154400.1.p Terpenoid BAHD medium pass BAHD__00031__sp_P0DO25_AT9_ACTDE
populus_tremula_x_alba_PtXaTreH.10G159800.1.p Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
populus_tremula_x_alba_PtXaTreH.10G167300.1.p Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
populus_tremula_x_alba_PtXaTreH.10G173100.1.p Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
populus_tremula_x_alba_PtXaTreH.10G183600.1.p Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
populus_tremula_x_alba_PtXaTreH.10G183700.1.p Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
populus_tremula_x_alba_PtXaTreH.10G188700.1.p Terpenoid BAHD medium pass BAHD__00042__sp_Q500Z2_ZDH20_ARATH
populus_tremula_x_alba_PtXaTreH.10G190100.1.p Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
populus_tremula_x_alba_PtXaTreH.11G036500.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
populus_tremula_x_alba_PtXaTreH.11G099300.1.p Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
populus_tremula_x_alba_PtXaTreH.11G111700.1.p Terpenoid BAHD medium pass BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
populus_tremula_x_alba_PtXaTreH.11G111800.1.p Terpenoid BAHD low borderline BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
populus_tremula_x_alba_PtXaTreH.11G111900.1.p Terpenoid BAHD low borderline BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
populus_tremula_x_alba_PtXaTreH.11G118500.1.p Terpenoid BAHD medium pass BAHD__00011__sp_A1A442_DGAT2_RICCO
populus_tremula_x_alba_PtXaTreH.11G119300.1.p Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
populus_tremula_x_alba_PtXaTreH.12G014800.1.p Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
populus_tremula_x_alba_PtXaTreH.12G077800.1.p Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
populus_tremula_x_alba_PtXaTreH.12G079600.1.p Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
populus_tremula_x_alba_PtXaTreH.12G091000.1.p Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
populus_tremula_x_alba_PtXaTreH.12G109700.1.p Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
populus_tremula_x_alba_PtXaTreH.13G064600.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
populus_tremula_x_alba_PtXaTreH.13G064700.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
populus_tremula_x_alba_PtXaTreH.13G064800.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
populus_tremula_x_alba_PtXaTreH.13G065000.1.p Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA