PlantSME Plant secondary metabolism enzyme database

Populus tremula x alba (populus_tremula_x_alba)

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Imported from atlas release summary for Populus tremula x alba.

2226
Candidate Protein Records
1994
Pathway-Level Records
4661
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.24% Alkaloid pathway 22.32% Phenylpropanoid pathway 18.71% Flavonoid pathway 14.04% Rosmarinic acid pathway 8.83% Steroid pathway 5.87%
Family Distribution
BAHD 6.05% C3'H/CYP98A 5.94% C4H 5.81% UGT 4.7% 7DLGT 4.4% UFGT 4.38% IFS 4.16% CYP76 3.65%
Other Families 60.91%
More Families (96)
T3O 164 3.52% POD 155 3.33% 4CL 150 3.22% F3H 124 2.66% DWF4/CYP90B1 113 2.42% NMT 93 2.0% CAD 80 1.72% STR 77 1.65% BR6OX2/CYP85A2 75 1.61% F3'H/CYP75B 70 1.5% BBE 67 1.44% H6H 64 1.37% HCT 64 1.37% CODM/T6ODM 63 1.35% SMT1/SMT2/SMT3 57 1.22% TRI/TRII 55 1.18% CAS 55 1.18% CYP71 55 1.18% SGD 53 1.14% CYP90D1 53 1.14% LAC 49 1.05% RAS 44 0.94% IFR 42 0.9% GES 41 0.88% PYKS 40 0.86% TPS 40 0.86% IO 37 0.79% CCR 37 0.79% TAT 37 0.79% GS 36 0.77% ANR 36 0.77% COMT 36 0.77% CSE 35 0.75% SLS 30 0.64% 16OMT 30 0.64% G8O/G8H 28 0.6% PMT 27 0.58% FNS 26 0.56% BR6OX1/CYP85A1 25 0.54% T16H 23 0.49% NCS 23 0.49% DFR 23 0.49% 7DLH 21 0.45% F5H/CYP84A 20 0.43% CPD/CYP90A1 20 0.43% 8HGO 19 0.41% LAMT 18 0.39% F3'5'H/CYP75A 18 0.39% PAL 18 0.39% CNMT 15 0.32% CHS 15 0.32% ISY 14 0.3% CYP51G1 14 0.3% MPO 11 0.24% COR 11 0.24% ANS/LDOX 11 0.24% DET2 11 0.24% SQS/FDFT1 10 0.21% SQE 10 0.21% AACT 10 0.21% GGPPS 10 0.21% HPPR 9 0.19% CPR 9 0.19% CYP719 7 0.15% ROT3/CYP90C1 7 0.15% SMO1/SMO2 7 0.15% FPPS 7 0.15% HMGR 7 0.15% MVK 7 0.15% MVD 7 0.15% DXS 6 0.13% TYDC_DDC 5 0.11% CCoAOMT 5 0.11% TDC 4 0.09% CYP80B1 4 0.09% CMK/IspE 4 0.09% CHI 3 0.06% MCT/IspD 3 0.06% ODC 2 0.04% XMT_MXMT_DXMT 2 0.04% HYD1 2 0.04% DWF7 2 0.04% DWF5 2 0.04% DWF1 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% PMK 2 0.04% HDR/IspH 2 0.04% HDS/IspG 2 0.04% DXR 2 0.04% CYP80F1 1 0.02% ADC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% CPI1 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 603 19 BAHD (228) View species results
Alkaloid pathway 445 21 7DLGT (101) View species results
Phenylpropanoid pathway 373 12 POD (149) View species results
Flavonoid pathway 280 10 UFGT (194) View species results
Rosmarinic acid pathway 176 7 C4H (66) View species results
Steroid pathway 117 13 CAS (50) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1697 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 390 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C3'H/CYP98A
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Protein/Isoform Record Pathway Family Confidence Status
populus_tremula_x_alba_PtXaTreH.13G124200.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.13G124300.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.13G124400.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.13G124900.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.13G126600.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G012000.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G012100.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G012200.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G012300.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G012400.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G012800.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G012900.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G013000.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G013100.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G013200.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G020700.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G027100.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G027300.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G027400.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G027500.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G027600.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G027700.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G031700.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G031800.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G039200.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G052800.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G052900.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G053000.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G053100.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G064200.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G079300.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.14G125300.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G139400.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G145400.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G145500.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G145600.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.14G146800.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.15G005100.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.15G020600.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.15G067900.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.15G068200.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.15G068300.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.15G069100.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.15G104600.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.15G108900.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.15G114200.1.p Phenylpropanoid C3'H/CYP98A low borderline
populus_tremula_x_alba_PtXaTreH.16G006500.1.p Phenylpropanoid C3'H/CYP98A medium pass
populus_tremula_x_alba_PtXaTreH.16G006700.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.16G022500.1.p Phenylpropanoid C3'H/CYP98A medium borderline
populus_tremula_x_alba_PtXaTreH.16G022600.1.p Phenylpropanoid C3'H/CYP98A medium borderline