Populus tremula x alba (populus_tremula_x_alba)
/
Imported from atlas release summary for Populus tremula x alba.
2226
Candidate Protein Records
1994
Pathway-Level Records
4661
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4661
Family-Level Calls
BAHD
6.05%
C3'H/CYP98A
5.94%
C4H
5.81%
UGT
4.7%
7DLGT
4.4%
UFGT
4.38%
IFS
4.16%
CYP76
3.65%
Other Families
60.91%
More Families (96)
T3O
164
3.52%
POD
155
3.33%
4CL
150
3.22%
F3H
124
2.66%
DWF4/CYP90B1
113
2.42%
NMT
93
2.0%
CAD
80
1.72%
STR
77
1.65%
BR6OX2/CYP85A2
75
1.61%
F3'H/CYP75B
70
1.5%
BBE
67
1.44%
H6H
64
1.37%
HCT
64
1.37%
CODM/T6ODM
63
1.35%
SMT1/SMT2/SMT3
57
1.22%
TRI/TRII
55
1.18%
CAS
55
1.18%
CYP71
55
1.18%
SGD
53
1.14%
CYP90D1
53
1.14%
LAC
49
1.05%
RAS
44
0.94%
IFR
42
0.9%
GES
41
0.88%
PYKS
40
0.86%
TPS
40
0.86%
IO
37
0.79%
CCR
37
0.79%
TAT
37
0.79%
GS
36
0.77%
ANR
36
0.77%
COMT
36
0.77%
CSE
35
0.75%
SLS
30
0.64%
16OMT
30
0.64%
G8O/G8H
28
0.6%
PMT
27
0.58%
FNS
26
0.56%
BR6OX1/CYP85A1
25
0.54%
T16H
23
0.49%
NCS
23
0.49%
DFR
23
0.49%
7DLH
21
0.45%
F5H/CYP84A
20
0.43%
CPD/CYP90A1
20
0.43%
8HGO
19
0.41%
LAMT
18
0.39%
F3'5'H/CYP75A
18
0.39%
PAL
18
0.39%
CNMT
15
0.32%
CHS
15
0.32%
ISY
14
0.3%
CYP51G1
14
0.3%
MPO
11
0.24%
COR
11
0.24%
ANS/LDOX
11
0.24%
DET2
11
0.24%
SQS/FDFT1
10
0.21%
SQE
10
0.21%
AACT
10
0.21%
GGPPS
10
0.21%
HPPR
9
0.19%
CPR
9
0.19%
CYP719
7
0.15%
ROT3/CYP90C1
7
0.15%
SMO1/SMO2
7
0.15%
FPPS
7
0.15%
HMGR
7
0.15%
MVK
7
0.15%
MVD
7
0.15%
DXS
6
0.13%
TYDC_DDC
5
0.11%
CCoAOMT
5
0.11%
TDC
4
0.09%
CYP80B1
4
0.09%
CMK/IspE
4
0.09%
CHI
3
0.06%
MCT/IspD
3
0.06%
ODC
2
0.04%
XMT_MXMT_DXMT
2
0.04%
HYD1
2
0.04%
DWF7
2
0.04%
DWF5
2
0.04%
DWF1
2
0.04%
MDS/IspF
2
0.04%
HMGS
2
0.04%
PMK
2
0.04%
HDR/IspH
2
0.04%
HDS/IspG
2
0.04%
DXR
2
0.04%
CYP80F1
1
0.02%
ADC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 603 | 19 | BAHD (228) | View species results |
| Alkaloid pathway | 445 | 21 | 7DLGT (101) | View species results |
| Phenylpropanoid pathway | 373 | 12 | POD (149) | View species results |
| Flavonoid pathway | 280 | 10 | UFGT (194) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (66) | View species results |
| Steroid pathway | 117 | 13 | CAS (50) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1697 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 390 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| populus_tremula_x_alba_PtXaTreH.05G189100.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.06G008900.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.06G134300.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.06G138900.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.08G055600.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.09G112700.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.10G163700.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.11G047100.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.12G056300.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.13G090800.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.13G100100.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.14G039000.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.14G088600.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.14G134500.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.14G134600.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.14G134700.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.15G057000.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.18G061100.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.18G080800.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.18G081500.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.18G081600.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.18G084700.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.19G013400.1.p | Rosmarinic Acid | RAS | medium | pass |
| populus_tremula_x_alba_PtXaTreH.19G084800.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.19G108900.1.p | Rosmarinic Acid | RAS | low | borderline |
| populus_tremula_x_alba_PtXaTreH.01G107600.1.p | Rosmarinic Acid | TAT | low | borderline |
| populus_tremula_x_alba_PtXaTreH.01G149300.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.01G255100.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.04G012300.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.05G019600.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.05G019800.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.06G009000.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.06G085200.1.p | Rosmarinic Acid | TAT | low | borderline |
| populus_tremula_x_alba_PtXaTreH.07G118500.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.07G118600.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.07G119700.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.08G024400.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.08G024700.1.p | Rosmarinic Acid | TAT | low | borderline |
| populus_tremula_x_alba_PtXaTreH.08G024800.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.08G050600.1.p | Rosmarinic Acid | TAT | low | borderline |
| populus_tremula_x_alba_PtXaTreH.10G041800.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G041900.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G042000.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G042100.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G042200.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G044000.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G044100.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G044200.1.p | Rosmarinic Acid | TAT | medium | pass |
| populus_tremula_x_alba_PtXaTreH.10G159800.1.p | Rosmarinic Acid | TAT | low | borderline |
| populus_tremula_x_alba_PtXaTreH.11G092000.1.p | Rosmarinic Acid | TAT | medium | pass |