PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

2612
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Potri.001G451100.1.p Alkaloid 16OMT medium borderline
Potri.002G180433.1.p Alkaloid 16OMT medium borderline
Potri.002G180466.1.p Alkaloid 16OMT medium borderline
Potri.002G180500.1.p Alkaloid 16OMT medium borderline
Potri.002G180600.1.p Alkaloid 16OMT medium borderline
Potri.002G180700.1.p Alkaloid 16OMT medium borderline
Potri.004G050400.2.p Alkaloid 16OMT medium borderline
Potri.004G050500.1.p Alkaloid 16OMT medium borderline
Potri.009G139700.1.p Alkaloid 16OMT medium borderline
Potri.009G139800.1.p Alkaloid 16OMT medium borderline
Potri.011G059500.1.p Alkaloid 16OMT medium borderline
Potri.011G059600.1.p Alkaloid 16OMT medium borderline
Potri.011G150500.1.p Alkaloid 16OMT medium borderline
Potri.012G006400.1.p Alkaloid 16OMT medium borderline
Potri.013G120800.1.p Alkaloid 16OMT medium borderline
Potri.013G121300.1.p Alkaloid 16OMT medium borderline
Potri.013G121400.1.p Alkaloid 16OMT medium borderline
Potri.013G121800.2.p Alkaloid 16OMT medium borderline
Potri.013G121900.1.p Alkaloid 16OMT medium borderline
Potri.013G122000.1.p Alkaloid 16OMT medium borderline
Potri.013G122000.2.p Alkaloid 16OMT medium borderline
Potri.013G122100.1.p Alkaloid 16OMT medium borderline
Potri.013G122400.1.p Alkaloid 16OMT medium borderline
Potri.013G136300.1.p Alkaloid 16OMT medium borderline
Potri.013G136300.2.p Alkaloid 16OMT medium borderline
Potri.013G136300.3.p Alkaloid 16OMT medium borderline
Potri.013G141301.1.p Alkaloid 16OMT medium borderline
Potri.013G143800.1.p Alkaloid 16OMT medium borderline
Potri.013G143800.2.p Alkaloid 16OMT medium borderline
Potri.014G029200.10.p Alkaloid 16OMT low borderline
Potri.014G029200.2.p Alkaloid 16OMT low borderline
Potri.014G029200.3.p Alkaloid 16OMT low borderline
Potri.014G106500.1.p Alkaloid 16OMT medium borderline
Potri.014G106500.3.p Alkaloid 16OMT medium borderline
Potri.014G106600.1.p Alkaloid 16OMT medium borderline
Potri.015G003100.4.p Alkaloid 16OMT medium borderline
Potri.016G101600.2.p Alkaloid 16OMT medium borderline
Potri.019G093000.1.p Alkaloid 16OMT medium borderline
Potri.019G093100.1.p Alkaloid 16OMT medium borderline
Potri.019G093202.1.p Alkaloid 16OMT medium borderline
Potri.019G102900.1.p Alkaloid 16OMT medium borderline
Potri.013G120900.2.p Alkaloid 6OMT_4OMT_SOMT medium borderline
Potri.001G016300.1.p Alkaloid 7DLGT low borderline
Potri.001G016500.1.p Alkaloid 7DLGT low borderline
Potri.001G030600.1.p Alkaloid 7DLGT low borderline
Potri.001G133000.3.p Alkaloid 7DLGT medium pass
Potri.001G133000.4.p Alkaloid 7DLGT medium pass
Potri.001G133100.2.p Alkaloid 7DLGT low borderline
Potri.001G245900.1.p Alkaloid 7DLGT medium pass
Potri.001G281800.1.p Alkaloid 7DLGT low borderline