Populus trichocarpa (populus_trichocarpa)
Imported from atlas release summary for Populus trichocarpa.
2612
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2612
Candidate Genes
C4H
6.05%
C3'H/CYP98A
5.87%
BAHD
5.67%
UGT
4.12%
UFGT
3.97%
4CL
3.97%
IFS
3.95%
7DLGT
3.94%
Other Families
62.47%
More Families (97)
POD
226
3.69%
CYP76
218
3.56%
T3O
217
3.55%
NMT
208
3.4%
F3H
143
2.34%
DWF4/CYP90B1
133
2.17%
STR
116
1.9%
F3'H/CYP75B
103
1.68%
CAS
93
1.52%
CAD
92
1.5%
BR6OX2/CYP85A2
92
1.5%
CYP90D1
85
1.39%
CYP71
83
1.36%
SMT1/SMT2/SMT3
80
1.31%
LAC
78
1.27%
CODM/T6ODM
77
1.26%
TRI/TRII
74
1.21%
BBE
72
1.18%
H6H
71
1.16%
IFR
62
1.01%
HCT
62
1.01%
GES
56
0.92%
SGD
54
0.88%
CSE
53
0.87%
TPS
53
0.87%
PYKS
52
0.85%
RAS
47
0.77%
ANR
46
0.75%
COMT
46
0.75%
CCR
45
0.74%
GS
42
0.69%
IO
41
0.67%
G8O/G8H
41
0.67%
16OMT
41
0.67%
TAT
40
0.65%
7DLH
38
0.62%
BR6OX1/CYP85A1
37
0.6%
SLS
34
0.56%
CPD/CYP90A1
34
0.56%
PMT
33
0.54%
LAMT
29
0.47%
FNS
29
0.47%
NCS
28
0.46%
COR
26
0.42%
T16H
26
0.42%
F3'5'H/CYP75A
26
0.42%
F5H/CYP84A
26
0.42%
DFR
23
0.38%
PAL
21
0.34%
8HGO
20
0.33%
SQS/FDFT1
19
0.31%
CNMT
18
0.29%
ANS/LDOX
17
0.28%
SQE
16
0.26%
CYP51G1
15
0.25%
GGPPS
15
0.25%
ISY
14
0.23%
CHS
14
0.23%
DET2
14
0.23%
AACT
14
0.23%
MPO
13
0.21%
CPR
13
0.21%
ROT3/CYP90C1
12
0.2%
HDS/IspG
12
0.2%
HPPR
11
0.18%
MVD
11
0.18%
CYP719
10
0.16%
FPPS
10
0.16%
CYP80B1
8
0.13%
MVK
8
0.13%
CCoAOMT
7
0.11%
DXS
7
0.11%
SMO1/SMO2
6
0.1%
DWF1
6
0.1%
HMGR
6
0.1%
TDC
5
0.08%
TYDC_DDC
5
0.08%
DWF5
4
0.07%
MCT/IspD
4
0.07%
XMT_MXMT_DXMT
3
0.05%
CHI
3
0.05%
HMGS
3
0.05%
PMK
3
0.05%
CMK/IspE
3
0.05%
HDR/IspH
3
0.05%
IDI
3
0.05%
ODC
2
0.03%
HYD1
2
0.03%
DWF7
2
0.03%
MDS/IspF
2
0.03%
DXR
2
0.03%
ADC
1
0.02%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
FLS
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 743 | 19 | BAHD (276) | View species results |
| Alkaloid pathway | 615 | 20 | 7DLGT (125) | View species results |
| Phenylpropanoid pathway | 524 | 11 | POD (217) | View species results |
| Flavonoid pathway | 344 | 10 | UFGT (232) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (81) | View species results |
| Steroid pathway | 173 | 13 | CAS (86) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2251 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 456 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Potri.001G036900.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Potri.001G055700.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Potri.001G091900.2.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.001G105900.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Potri.001G321800.2.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Potri.002G010600.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.002G012800.3.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Potri.002G084100.2.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.002G192400.11.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.002G192400.13.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.002G192400.14.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.002G192400.15.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.002G192400.16.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.002G192400.17.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.003G099700.2.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.003G139700.1.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.003G172651.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Potri.003G188500.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Potri.004G000300.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.004G000300.2.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.004G082000.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.004G102000.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Potri.005G099500.2.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.005G099500.3.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.005G099500.4.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.005G102901.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.005G177500.1.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Potri.005G248500.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Potri.005G250700.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.005G250700.5.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.006G036200.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.006G036300.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.006G169700.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Potri.007G059401.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.008G031500.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Potri.008G108000.5.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.008G108000.6.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.009G109900.1.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Potri.009G109900.2.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Potri.009G109900.3.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Potri.010G057000.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Potri.010G057000.3.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Potri.010G090200.1.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Potri.010G141501.1.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Potri.010G230200.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Potri.011G164100.2.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Potri.011G164100.3.p | Rosmarinic Acid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Potri.012G094800.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Potri.012G094900.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Potri.012G095000.1.p | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |