PlantSME Plant secondary metabolism enzyme database

Populus trichocarpa (populus_trichocarpa)

Imported from atlas release summary for Populus trichocarpa.

2612
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.45% Alkaloid pathway 23.55% Phenylpropanoid pathway 20.06% Flavonoid pathway 13.17% Rosmarinic acid pathway 8.15% Steroid pathway 6.62%
Family Distribution
C4H 6.05% C3'H/CYP98A 5.87% BAHD 5.67% UGT 4.12% UFGT 3.97% 4CL 3.97% IFS 3.95% 7DLGT 3.94%
Other Families 62.47%
More Families (97)
POD 226 3.69% CYP76 218 3.56% T3O 217 3.55% NMT 208 3.4% F3H 143 2.34% DWF4/CYP90B1 133 2.17% STR 116 1.9% F3'H/CYP75B 103 1.68% CAS 93 1.52% CAD 92 1.5% BR6OX2/CYP85A2 92 1.5% CYP90D1 85 1.39% CYP71 83 1.36% SMT1/SMT2/SMT3 80 1.31% LAC 78 1.27% CODM/T6ODM 77 1.26% TRI/TRII 74 1.21% BBE 72 1.18% H6H 71 1.16% IFR 62 1.01% HCT 62 1.01% GES 56 0.92% SGD 54 0.88% CSE 53 0.87% TPS 53 0.87% PYKS 52 0.85% RAS 47 0.77% ANR 46 0.75% COMT 46 0.75% CCR 45 0.74% GS 42 0.69% IO 41 0.67% G8O/G8H 41 0.67% 16OMT 41 0.67% TAT 40 0.65% 7DLH 38 0.62% BR6OX1/CYP85A1 37 0.6% SLS 34 0.56% CPD/CYP90A1 34 0.56% PMT 33 0.54% LAMT 29 0.47% FNS 29 0.47% NCS 28 0.46% COR 26 0.42% T16H 26 0.42% F3'5'H/CYP75A 26 0.42% F5H/CYP84A 26 0.42% DFR 23 0.38% PAL 21 0.34% 8HGO 20 0.33% SQS/FDFT1 19 0.31% CNMT 18 0.29% ANS/LDOX 17 0.28% SQE 16 0.26% CYP51G1 15 0.25% GGPPS 15 0.25% ISY 14 0.23% CHS 14 0.23% DET2 14 0.23% AACT 14 0.23% MPO 13 0.21% CPR 13 0.21% ROT3/CYP90C1 12 0.2% HDS/IspG 12 0.2% HPPR 11 0.18% MVD 11 0.18% CYP719 10 0.16% FPPS 10 0.16% CYP80B1 8 0.13% MVK 8 0.13% CCoAOMT 7 0.11% DXS 7 0.11% SMO1/SMO2 6 0.1% DWF1 6 0.1% HMGR 6 0.1% TDC 5 0.08% TYDC_DDC 5 0.08% DWF5 4 0.07% MCT/IspD 4 0.07% XMT_MXMT_DXMT 3 0.05% CHI 3 0.05% HMGS 3 0.05% PMK 3 0.05% CMK/IspE 3 0.05% HDR/IspH 3 0.05% IDI 3 0.05% ODC 2 0.03% HYD1 2 0.03% DWF7 2 0.03% MDS/IspF 2 0.03% DXR 2 0.03% ADC 1 0.02% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02% FLS 1 0.02% FK 1 0.02% CPI1 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 743 19 BAHD (276) View species results
Alkaloid pathway 615 20 7DLGT (125) View species results
Phenylpropanoid pathway 524 11 POD (217) View species results
Flavonoid pathway 344 10 UFGT (232) View species results
Rosmarinic acid pathway 213 7 C4H (81) View species results
Steroid pathway 173 13 CAS (86) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2251 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 456 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
Potri.001G250900.1.p Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Potri.001G250900.2.p Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Potri.001G312700.2.p Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Potri.002G039400.1.p Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
Potri.005G100800.10.p Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Potri.005G100800.11.p Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Potri.006G003400.1.p Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
Potri.009G045500.1.p Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
Potri.015G043400.1.p Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
Potri.016G004100.6.p Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN