PlantSME Plant secondary metabolism enzyme database

Populus wilsonii (populus_wilsonii)

Imported from atlas release summary for Populus wilsonii.

2104
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.66% Alkaloid pathway 22.67% Phenylpropanoid pathway 19.68% Flavonoid pathway 13.97% Rosmarinic acid pathway 8.17% Steroid pathway 5.85%
Family Distribution
BAHD 5.91% C3'H/CYP98A 5.89% C4H 5.71% UGT 4.77% 7DLGT 4.54% UFGT 4.38% IFS 3.81% T3O 3.52%
Other Families 61.46%
More Families (94)
CYP76 172 3.52% 4CL 171 3.5% POD 164 3.36% F3H 130 2.66% DWF4/CYP90B1 126 2.58% NMT 92 1.88% F3'H/CYP75B 87 1.78% STR 81 1.66% CAD 72 1.47% H6H 69 1.41% BR6OX2/CYP85A2 69 1.41% CYP71 69 1.41% LAC 67 1.37% BBE 65 1.33% CODM/T6ODM 62 1.27% CAS 61 1.25% HCT 59 1.21% SMT1/SMT2/SMT3 59 1.21% TRI/TRII 58 1.19% CYP90D1 58 1.19% CSE 54 1.11% SGD 50 1.02% GES 48 0.98% IFR 48 0.98% TPS 47 0.96% TAT 41 0.84% PYKS 39 0.8% IO 39 0.8% COMT 39 0.8% GS 37 0.76% RAS 36 0.74% PMT 32 0.65% 16OMT 32 0.65% CCR 32 0.65% ANR 31 0.63% T16H 30 0.61% G8O/G8H 29 0.59% FNS 29 0.59% NCS 25 0.51% SLS 25 0.51% F3'5'H/CYP75A 25 0.51% 7DLH 23 0.47% F5H/CYP84A 23 0.47% CPD/CYP90A1 21 0.43% LAMT 18 0.37% BR6OX1/CYP85A1 18 0.37% 8HGO 17 0.35% CYP51G1 17 0.35% DET2 17 0.35% DFR 16 0.33% PAL 15 0.31% CNMT 14 0.29% SQE 14 0.29% ISY 13 0.27% CHS 13 0.27% COR 12 0.25% ANS/LDOX 12 0.25% ROT3/CYP90C1 12 0.25% GGPPS 12 0.25% CPR 11 0.23% CYP719 10 0.2% SQS/FDFT1 10 0.2% AACT 10 0.2% MPO 9 0.18% FPPS 8 0.16% CCoAOMT 7 0.14% HPPR 7 0.14% DXS 7 0.14% HMGR 6 0.12% MVK 6 0.12% MVD 6 0.12% TYDC_DDC 5 0.1% SMO1/SMO2 5 0.1% MCT/IspD 5 0.1% CMK/IspE 4 0.08% ODC 3 0.06% TDC 3 0.06% CHI 3 0.06% DWF1 3 0.06% DWF5 3 0.06% HMGS 3 0.06% CYP80B1 2 0.04% CYP80F1 2 0.04% HYD1 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% PMK 2 0.04% HDR/IspH 2 0.04% HDS/IspG 2 0.04% DXR 2 0.04% IDI 2 0.04% ADC 1 0.02% FK 1 0.02% CPI1 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 624 20 BAHD (224) View species results
Alkaloid pathway 477 18 7DLGT (115) View species results
Phenylpropanoid pathway 414 11 POD (159) View species results
Flavonoid pathway 294 10 UFGT (199) View species results
Rosmarinic acid pathway 172 7 C4H (59) View species results
Steroid pathway 123 13 CAS (55) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1782 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 384 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
populus_wilsonii_Pwi01G011310.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
populus_wilsonii_Pwi05G008560.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi06G008050.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
populus_wilsonii_Pwi06G008060.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi08G012790.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi08G017090.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi10G002710.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi10G008040.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi12G003420.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi16G009710.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
populus_wilsonii_Pwi16G009730.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
populus_wilsonii_Pwi17G005750.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO