PlantSME Plant secondary metabolism enzyme database

Primula veris (primula_veris)

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Imported from atlas release summary for Primula veris.

1573
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.61% Alkaloid pathway 23.14% Phenylpropanoid pathway 20.66% Flavonoid pathway 12.52% Rosmarinic acid pathway 5.53% Steroid pathway 5.53%
Family Distribution
C4H 7.41% C3'H/CYP98A 5.93% UGT 4.82% BAHD 4.71% CYP76 3.96% 7DLGT 3.64% IFS 3.61% 4CL 3.55%
Other Families 62.38%
More Families (96)
POD 141 3.21% UFGT 140 3.18% F3H 122 2.77% DWF4/CYP90B1 120 2.73% T3O 111 2.52% F3'H/CYP75B 109 2.48% NMT 91 2.07% G8O/G8H 83 1.89% T16H 77 1.75% STR 77 1.75% BR6OX2/CYP85A2 77 1.75% H6H 68 1.55% CODM/T6ODM 66 1.5% CAD 54 1.23% CYP71 54 1.23% PYKS 51 1.16% CSE 51 1.16% F5H/CYP84A 51 1.16% SMT1/SMT2/SMT3 51 1.16% CAS 49 1.11% TRI/TRII 48 1.09% F3'5'H/CYP75A 48 1.09% TPS 48 1.09% COMT 44 1.0% 7DLH 43 0.98% GES 41 0.93% FNS 39 0.89% CPD/CYP90A1 38 0.86% LAC 37 0.84% IFR 36 0.82% CYP90D1 35 0.8% GS 32 0.73% SLS 32 0.73% ANR 31 0.7% IO 28 0.64% HCT 28 0.64% NCS 26 0.59% CHS 26 0.59% 16OMT 25 0.57% BBE 25 0.57% COR 20 0.45% TAT 20 0.45% ANS/LDOX 19 0.43% CCR 19 0.43% ROT3/CYP90C1 16 0.36% PMT 15 0.34% LAMT 15 0.34% 8HGO 14 0.32% SGD 14 0.32% GGPPS 14 0.32% CYP80B1 12 0.27% PAL 12 0.27% RAS 12 0.27% CYP719 11 0.25% CPR 11 0.25% CCoAOMT 10 0.23% CNMT 9 0.2% TYDC_DDC 9 0.2% ISY 8 0.18% XMT_MXMT_DXMT 8 0.18% SQS/FDFT1 7 0.16% MVK 7 0.16% FPPS 7 0.16% MPO 6 0.14% BR6OX1/CYP85A1 6 0.14% DET2 6 0.14% AACT 6 0.14% CHI 5 0.11% DFR 5 0.11% FLS 5 0.11% HPPR 5 0.11% SQE 5 0.11% HMGR 5 0.11% CYP80F1 4 0.09% SMO1/SMO2 4 0.09% CYP51G1 4 0.09% 6OMT_4OMT_SOMT 3 0.07% MCT/IspD 3 0.07% HMGS 3 0.07% MVD 3 0.07% DXS 3 0.07% ODC 2 0.05% TDC 2 0.05% HYD1 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% MDS/IspF 2 0.05% ADC 1 0.02% DWF5 1 0.02% FK 1 0.02% DWF1 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 513 18 UGT (195) View species results
Alkaloid pathway 364 23 T3O (50) View species results
Phenylpropanoid pathway 325 13 POD (124) View species results
Flavonoid pathway 197 13 UFGT (104) View species results
Rosmarinic acid pathway 87 7 4CL (32) View species results
Steroid pathway 87 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1879 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 247 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
primula_veris_pveT_jg23494 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
primula_veris_pveT_jg23509 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00006__sp_Q7XB11_4OMT1_PAPSO
primula_veris_pveT_jg3836 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG