Primula veris (primula_veris)
/
Imported from atlas release summary for Primula veris.
1573
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1573
Candidate Genes
C4H
7.41%
C3'H/CYP98A
5.93%
UGT
4.82%
BAHD
4.71%
CYP76
3.96%
7DLGT
3.64%
IFS
3.61%
4CL
3.55%
Other Families
62.38%
More Families (96)
POD
141
3.21%
UFGT
140
3.18%
F3H
122
2.77%
DWF4/CYP90B1
120
2.73%
T3O
111
2.52%
F3'H/CYP75B
109
2.48%
NMT
91
2.07%
G8O/G8H
83
1.89%
T16H
77
1.75%
STR
77
1.75%
BR6OX2/CYP85A2
77
1.75%
H6H
68
1.55%
CODM/T6ODM
66
1.5%
CAD
54
1.23%
CYP71
54
1.23%
PYKS
51
1.16%
CSE
51
1.16%
F5H/CYP84A
51
1.16%
SMT1/SMT2/SMT3
51
1.16%
CAS
49
1.11%
TRI/TRII
48
1.09%
F3'5'H/CYP75A
48
1.09%
TPS
48
1.09%
COMT
44
1.0%
7DLH
43
0.98%
GES
41
0.93%
FNS
39
0.89%
CPD/CYP90A1
38
0.86%
LAC
37
0.84%
IFR
36
0.82%
CYP90D1
35
0.8%
GS
32
0.73%
SLS
32
0.73%
ANR
31
0.7%
IO
28
0.64%
HCT
28
0.64%
NCS
26
0.59%
CHS
26
0.59%
16OMT
25
0.57%
BBE
25
0.57%
COR
20
0.45%
TAT
20
0.45%
ANS/LDOX
19
0.43%
CCR
19
0.43%
ROT3/CYP90C1
16
0.36%
PMT
15
0.34%
LAMT
15
0.34%
8HGO
14
0.32%
SGD
14
0.32%
GGPPS
14
0.32%
CYP80B1
12
0.27%
PAL
12
0.27%
RAS
12
0.27%
CYP719
11
0.25%
CPR
11
0.25%
CCoAOMT
10
0.23%
CNMT
9
0.2%
TYDC_DDC
9
0.2%
ISY
8
0.18%
XMT_MXMT_DXMT
8
0.18%
SQS/FDFT1
7
0.16%
MVK
7
0.16%
FPPS
7
0.16%
MPO
6
0.14%
BR6OX1/CYP85A1
6
0.14%
DET2
6
0.14%
AACT
6
0.14%
CHI
5
0.11%
DFR
5
0.11%
FLS
5
0.11%
HPPR
5
0.11%
SQE
5
0.11%
HMGR
5
0.11%
CYP80F1
4
0.09%
SMO1/SMO2
4
0.09%
CYP51G1
4
0.09%
6OMT_4OMT_SOMT
3
0.07%
MCT/IspD
3
0.07%
HMGS
3
0.07%
MVD
3
0.07%
DXS
3
0.07%
ODC
2
0.05%
TDC
2
0.05%
HYD1
2
0.05%
DWF7
2
0.05%
HDR/IspH
2
0.05%
MDS/IspF
2
0.05%
ADC
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
DWF1
1
0.02%
CPI1
1
0.02%
HDS/IspG
1
0.02%
PMK
1
0.02%
IDI
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 513 | 18 | UGT (195) | View species results |
| Alkaloid pathway | 364 | 23 | T3O (50) | View species results |
| Phenylpropanoid pathway | 325 | 13 | POD (124) | View species results |
| Flavonoid pathway | 197 | 13 | UFGT (104) | View species results |
| Rosmarinic acid pathway | 87 | 7 | 4CL (32) | View species results |
| Steroid pathway | 87 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1879 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 247 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| primula_veris_pveT_jg11062 | Alkaloid | IO | low | borderline |
| primula_veris_pveT_jg14210 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg15053 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg16131 | Alkaloid | IO | low | borderline |
| primula_veris_pveT_jg16177 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg16810 | Alkaloid | IO | low | borderline |
| primula_veris_pveT_jg20093 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg20806 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg22455 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg22466 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg26987 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg27796 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg27797 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg28706 | Alkaloid | IO | high | pass |
| primula_veris_pveT_jg28707 | Alkaloid | IO | medium | pass |
| primula_veris_pveT_jg28708 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg28709 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg30251 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg30252 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg32494 | Alkaloid | IO | low | borderline |
| primula_veris_pveT_jg33375 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg33675 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg33678 | Alkaloid | IO | high | pass |
| primula_veris_pveT_jg5603 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg672 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg7784 | Alkaloid | IO | medium | borderline |
| primula_veris_pveT_jg9244 | Alkaloid | IO | low | borderline |
| primula_veris_pveT_jg9428 | Alkaloid | IO | medium | borderline |