Primula vulgaris (primula_vulgaris)
Imported from atlas release summary for Primula vulgaris.
1465
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1465
Candidate Genes
C4H
7.36%
BAHD
6.1%
C3'H/CYP98A
5.27%
UGT
4.62%
7DLGT
4.15%
UFGT
4.13%
4CL
4.04%
POD
3.64%
Other Families
60.69%
More Families (97)
CYP76
154
3.57%
T3O
135
3.13%
IFS
134
3.11%
NMT
111
2.58%
F3H
86
2.0%
DWF4/CYP90B1
86
2.0%
STR
77
1.79%
CYP71
76
1.76%
F3'H/CYP75B
73
1.69%
G8O/G8H
72
1.67%
BR6OX2/CYP85A2
72
1.67%
CSE
61
1.42%
CODM/T6ODM
57
1.32%
FNS
57
1.32%
CAD
56
1.3%
PYKS
55
1.28%
H6H
52
1.21%
CAS
48
1.11%
TRI/TRII
46
1.07%
HCT
46
1.07%
F5H/CYP84A
45
1.04%
SMT1/SMT2/SMT3
45
1.04%
IFR
44
1.02%
COMT
44
1.02%
TAT
44
1.02%
TPS
41
0.95%
T16H
40
0.93%
GS
39
0.91%
GES
34
0.79%
F3'5'H/CYP75A
32
0.74%
IO
31
0.72%
LAC
31
0.72%
7DLH
28
0.65%
CHS
28
0.65%
CYP90D1
28
0.65%
ANR
25
0.58%
ANS/LDOX
25
0.58%
SLS
24
0.56%
COR
21
0.49%
SGD
20
0.46%
NCS
20
0.46%
CPD/CYP90A1
20
0.46%
BBE
18
0.42%
PMT
16
0.37%
CCoAOMT
16
0.37%
CCR
15
0.35%
BR6OX1/CYP85A1
15
0.35%
RAS
13
0.3%
CPR
13
0.3%
16OMT
12
0.28%
CNMT
11
0.26%
CYP51G1
11
0.26%
8HGO
10
0.23%
ISY
10
0.23%
ROT3/CYP90C1
10
0.23%
SQS/FDFT1
10
0.23%
TYDC_DDC
9
0.21%
LAMT
9
0.21%
PAL
9
0.21%
SQE
9
0.21%
MPO
8
0.19%
DFR
8
0.19%
HPPR
8
0.19%
GGPPS
8
0.19%
FPPS
8
0.19%
MVK
8
0.19%
CYP80B1
7
0.16%
CYP719
7
0.16%
DXS
7
0.16%
DET2
6
0.14%
HMGR
6
0.14%
CHI
5
0.12%
AACT
5
0.12%
SMO1/SMO2
4
0.09%
MVD
4
0.09%
TDC
3
0.07%
CPI1
3
0.07%
PMK
3
0.07%
HMGS
3
0.07%
ODC
2
0.05%
CYP80F1
2
0.05%
DWF7
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
IDI
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 449 | 19 | BAHD (166) | View species results |
| Alkaloid pathway | 349 | 22 | 7DLGT (58) | View species results |
| Phenylpropanoid pathway | 257 | 13 | POD (98) | View species results |
| Flavonoid pathway | 242 | 10 | UFGT (162) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (30) | View species results |
| Steroid pathway | 62 | 9 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1646 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 322 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PRvulLH_v2_00004230062460.1 | Alkaloid | BBE | medium | borderline | BBE__00002__sp_F1T160_BBLA_TOBAC |
| PRvulLH_v2_00004230062480.1 | Alkaloid | BBE | low | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00004230062490.1 | Alkaloid | BBE | medium | borderline | BBE__00001__sp_A7WPL6_BBLB_TOBAC |
| PRvulLH_v2_00006080087580.1 | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| PRvulLH_v2_00006080087630.1 | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00006080087640.1 | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00006080087650.1 | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00006130088890.1 | Alkaloid | BBE | low | borderline | BBE__00003__sp_F1T161_BBLC1_TOBAC |
| PRvulLH_v2_00007200099290.1 | Alkaloid | BBE | low | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| PRvulLH_v2_00007280100350.1 | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00007280100350.2 | Alkaloid | BBE | low | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00008440113170.1 | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| PRvulLH_v2_00008440113190.1 | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| PRvulLH_v2_00008780115240.1 | Alkaloid | BBE | medium | borderline | BBE__00003__sp_F1T161_BBLC1_TOBAC |
| PRvulLH_v2_00008860116130.1 | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00008860116140.1 | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| PRvulLH_v2_00009220118930.1 | Alkaloid | BBE | medium | borderline | BBE__00001__sp_A7WPL6_BBLB_TOBAC |
| PRvulLH_v2_00012240145850.1 | Alkaloid | BBE | medium | borderline | BBE__00001__sp_A7WPL6_BBLB_TOBAC |