PlantSME Plant secondary metabolism enzyme database

Primula vulgaris (primula_vulgaris)

Imported from atlas release summary for Primula vulgaris.

1465
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.65% Alkaloid pathway 23.82% Phenylpropanoid pathway 17.54% Flavonoid pathway 16.52% Rosmarinic acid pathway 7.24% Steroid pathway 4.23%
Family Distribution
C4H 7.36% BAHD 6.1% C3'H/CYP98A 5.27% UGT 4.62% 7DLGT 4.15% UFGT 4.13% 4CL 4.04% POD 3.64%
Other Families 60.69%
More Families (97)
CYP76 154 3.57% T3O 135 3.13% IFS 134 3.11% NMT 111 2.58% F3H 86 2.0% DWF4/CYP90B1 86 2.0% STR 77 1.79% CYP71 76 1.76% F3'H/CYP75B 73 1.69% G8O/G8H 72 1.67% BR6OX2/CYP85A2 72 1.67% CSE 61 1.42% CODM/T6ODM 57 1.32% FNS 57 1.32% CAD 56 1.3% PYKS 55 1.28% H6H 52 1.21% CAS 48 1.11% TRI/TRII 46 1.07% HCT 46 1.07% F5H/CYP84A 45 1.04% SMT1/SMT2/SMT3 45 1.04% IFR 44 1.02% COMT 44 1.02% TAT 44 1.02% TPS 41 0.95% T16H 40 0.93% GS 39 0.91% GES 34 0.79% F3'5'H/CYP75A 32 0.74% IO 31 0.72% LAC 31 0.72% 7DLH 28 0.65% CHS 28 0.65% CYP90D1 28 0.65% ANR 25 0.58% ANS/LDOX 25 0.58% SLS 24 0.56% COR 21 0.49% SGD 20 0.46% NCS 20 0.46% CPD/CYP90A1 20 0.46% BBE 18 0.42% PMT 16 0.37% CCoAOMT 16 0.37% CCR 15 0.35% BR6OX1/CYP85A1 15 0.35% RAS 13 0.3% CPR 13 0.3% 16OMT 12 0.28% CNMT 11 0.26% CYP51G1 11 0.26% 8HGO 10 0.23% ISY 10 0.23% ROT3/CYP90C1 10 0.23% SQS/FDFT1 10 0.23% TYDC_DDC 9 0.21% LAMT 9 0.21% PAL 9 0.21% SQE 9 0.21% MPO 8 0.19% DFR 8 0.19% HPPR 8 0.19% GGPPS 8 0.19% FPPS 8 0.19% MVK 8 0.19% CYP80B1 7 0.16% CYP719 7 0.16% DXS 7 0.16% DET2 6 0.14% HMGR 6 0.14% CHI 5 0.12% AACT 5 0.12% SMO1/SMO2 4 0.09% MVD 4 0.09% TDC 3 0.07% CPI1 3 0.07% PMK 3 0.07% HMGS 3 0.07% ODC 2 0.05% CYP80F1 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% MCT/IspD 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% 6OMT_4OMT_SOMT 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 449 19 BAHD (166) View species results
Alkaloid pathway 349 22 7DLGT (58) View species results
Phenylpropanoid pathway 257 13 POD (98) View species results
Flavonoid pathway 242 10 UFGT (162) View species results
Rosmarinic acid pathway 106 7 C4H (30) View species results
Steroid pathway 62 9 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1646 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 322 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Gene Pathway Family Confidence Status Best Target
PRvulLH_v2_00000670010200.1 Alkaloid ISY low borderline ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
PRvulLH_v2_00006650094050.1 Alkaloid ISY medium pass ISY__00007__sp_A0A221J5X6_ISY2_NEPRA
PRvulLH_v2_00008960116840.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
PRvulLH_v2_00009750126160.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
PRvulLH_v2_00021060189380.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
PRvulLH_v2_00023770197230.1 Alkaloid ISY medium pass ISY__00004__sp_A0A221J5W8_ISY1_NEPCA
PRvulLH_v2_00049430220360.1 Alkaloid ISY medium pass ISY__00006__sp_A0A221J5X3_ISY1_NEPRA
PRvulLH_v2_00441570230770.1 Alkaloid ISY medium pass ISY__00001__sp_A0A1C9CX56_CYC1_CAMAC
PRvulLH_v2_00606900236610.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
PRvulLH_v2_00635300238650.1 Alkaloid ISY medium pass ISY__00008__sp_K7WDL7_IRIS_CATRO