PlantSME Plant secondary metabolism enzyme database

Primula vulgaris (primula_vulgaris)

Imported from atlas release summary for Primula vulgaris.

1465
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.65% Alkaloid pathway 23.82% Phenylpropanoid pathway 17.54% Flavonoid pathway 16.52% Rosmarinic acid pathway 7.24% Steroid pathway 4.23%
Family Distribution
C4H 7.36% BAHD 6.1% C3'H/CYP98A 5.27% UGT 4.62% 7DLGT 4.15% UFGT 4.13% 4CL 4.04% POD 3.64%
Other Families 60.69%
More Families (97)
CYP76 154 3.57% T3O 135 3.13% IFS 134 3.11% NMT 111 2.58% F3H 86 2.0% DWF4/CYP90B1 86 2.0% STR 77 1.79% CYP71 76 1.76% F3'H/CYP75B 73 1.69% G8O/G8H 72 1.67% BR6OX2/CYP85A2 72 1.67% CSE 61 1.42% CODM/T6ODM 57 1.32% FNS 57 1.32% CAD 56 1.3% PYKS 55 1.28% H6H 52 1.21% CAS 48 1.11% TRI/TRII 46 1.07% HCT 46 1.07% F5H/CYP84A 45 1.04% SMT1/SMT2/SMT3 45 1.04% IFR 44 1.02% COMT 44 1.02% TAT 44 1.02% TPS 41 0.95% T16H 40 0.93% GS 39 0.91% GES 34 0.79% F3'5'H/CYP75A 32 0.74% IO 31 0.72% LAC 31 0.72% 7DLH 28 0.65% CHS 28 0.65% CYP90D1 28 0.65% ANR 25 0.58% ANS/LDOX 25 0.58% SLS 24 0.56% COR 21 0.49% SGD 20 0.46% NCS 20 0.46% CPD/CYP90A1 20 0.46% BBE 18 0.42% PMT 16 0.37% CCoAOMT 16 0.37% CCR 15 0.35% BR6OX1/CYP85A1 15 0.35% RAS 13 0.3% CPR 13 0.3% 16OMT 12 0.28% CNMT 11 0.26% CYP51G1 11 0.26% 8HGO 10 0.23% ISY 10 0.23% ROT3/CYP90C1 10 0.23% SQS/FDFT1 10 0.23% TYDC_DDC 9 0.21% LAMT 9 0.21% PAL 9 0.21% SQE 9 0.21% MPO 8 0.19% DFR 8 0.19% HPPR 8 0.19% GGPPS 8 0.19% FPPS 8 0.19% MVK 8 0.19% CYP80B1 7 0.16% CYP719 7 0.16% DXS 7 0.16% DET2 6 0.14% HMGR 6 0.14% CHI 5 0.12% AACT 5 0.12% SMO1/SMO2 4 0.09% MVD 4 0.09% TDC 3 0.07% CPI1 3 0.07% PMK 3 0.07% HMGS 3 0.07% ODC 2 0.05% CYP80F1 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% MCT/IspD 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% 6OMT_4OMT_SOMT 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 449 19 BAHD (166) View species results
Alkaloid pathway 349 22 7DLGT (58) View species results
Phenylpropanoid pathway 257 13 POD (98) View species results
Flavonoid pathway 242 10 UFGT (162) View species results
Rosmarinic acid pathway 106 7 C4H (30) View species results
Steroid pathway 62 9 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1646 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 322 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
PRvulLH_v2_00017770176390.2 Flavonoid IFS medium borderline
PRvulLH_v2_00018390178860.1 Flavonoid IFS low borderline
PRvulLH_v2_00018530179680.1 Flavonoid IFS low borderline
PRvulLH_v2_00018730180670.1 Flavonoid IFS medium borderline
PRvulLH_v2_00020350186240.1 Flavonoid IFS medium borderline
PRvulLH_v2_00020580186940.1 Flavonoid IFS medium borderline
PRvulLH_v2_00020770188410.1 Flavonoid IFS low borderline
PRvulLH_v2_00021440190230.1 Flavonoid IFS low borderline
PRvulLH_v2_00021640190680.1 Flavonoid IFS low borderline
PRvulLH_v2_00022180192560.1 Flavonoid IFS medium borderline
PRvulLH_v2_00022180192660.1 Flavonoid IFS low borderline
PRvulLH_v2_00022890194030.1 Flavonoid IFS low borderline
PRvulLH_v2_00023230195820.1 Flavonoid IFS medium borderline
PRvulLH_v2_00023680196840.1 Flavonoid IFS medium borderline
PRvulLH_v2_00023680196870.1 Flavonoid IFS medium borderline
PRvulLH_v2_00024670199600.1 Flavonoid IFS low borderline
PRvulLH_v2_00026240202170.1 Flavonoid IFS low borderline
PRvulLH_v2_00026450202740.1 Flavonoid IFS low borderline
PRvulLH_v2_00034930213250.1 Flavonoid IFS low borderline
PRvulLH_v2_00036970214520.1 Flavonoid IFS low borderline
PRvulLH_v2_00037800215280.1 Flavonoid IFS low borderline
PRvulLH_v2_00041060217030.1 Flavonoid IFS low borderline
PRvulLH_v2_00041270217130.1 Flavonoid IFS medium borderline
PRvulLH_v2_00041700217470.1 Flavonoid IFS low borderline
PRvulLH_v2_00043220218020.1 Flavonoid IFS low borderline
PRvulLH_v2_00043220218050.1 Flavonoid IFS low borderline
PRvulLH_v2_00043310218110.1 Flavonoid IFS low borderline
PRvulLH_v2_00043310218120.1 Flavonoid IFS low borderline
PRvulLH_v2_00054850221600.1 Flavonoid IFS medium borderline
PRvulLH_v2_00389240229590.1 Flavonoid IFS low borderline
PRvulLH_v2_00438310230670.1 Flavonoid IFS medium borderline
PRvulLH_v2_00488250232010.1 Flavonoid IFS low borderline
PRvulLH_v2_00649410240030.1 Flavonoid IFS low borderline
PRvulLH_v2_00675840245480.1 Flavonoid IFS medium borderline