PlantSME Plant secondary metabolism enzyme database

Primula vulgaris (primula_vulgaris)

Imported from atlas release summary for Primula vulgaris.

1465
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.65% Alkaloid pathway 23.82% Phenylpropanoid pathway 17.54% Flavonoid pathway 16.52% Rosmarinic acid pathway 7.24% Steroid pathway 4.23%
Family Distribution
C4H 7.36% BAHD 6.1% C3'H/CYP98A 5.27% UGT 4.62% 7DLGT 4.15% UFGT 4.13% 4CL 4.04% POD 3.64%
Other Families 60.69%
More Families (97)
CYP76 154 3.57% T3O 135 3.13% IFS 134 3.11% NMT 111 2.58% F3H 86 2.0% DWF4/CYP90B1 86 2.0% STR 77 1.79% CYP71 76 1.76% F3'H/CYP75B 73 1.69% G8O/G8H 72 1.67% BR6OX2/CYP85A2 72 1.67% CSE 61 1.42% CODM/T6ODM 57 1.32% FNS 57 1.32% CAD 56 1.3% PYKS 55 1.28% H6H 52 1.21% CAS 48 1.11% TRI/TRII 46 1.07% HCT 46 1.07% F5H/CYP84A 45 1.04% SMT1/SMT2/SMT3 45 1.04% IFR 44 1.02% COMT 44 1.02% TAT 44 1.02% TPS 41 0.95% T16H 40 0.93% GS 39 0.91% GES 34 0.79% F3'5'H/CYP75A 32 0.74% IO 31 0.72% LAC 31 0.72% 7DLH 28 0.65% CHS 28 0.65% CYP90D1 28 0.65% ANR 25 0.58% ANS/LDOX 25 0.58% SLS 24 0.56% COR 21 0.49% SGD 20 0.46% NCS 20 0.46% CPD/CYP90A1 20 0.46% BBE 18 0.42% PMT 16 0.37% CCoAOMT 16 0.37% CCR 15 0.35% BR6OX1/CYP85A1 15 0.35% RAS 13 0.3% CPR 13 0.3% 16OMT 12 0.28% CNMT 11 0.26% CYP51G1 11 0.26% 8HGO 10 0.23% ISY 10 0.23% ROT3/CYP90C1 10 0.23% SQS/FDFT1 10 0.23% TYDC_DDC 9 0.21% LAMT 9 0.21% PAL 9 0.21% SQE 9 0.21% MPO 8 0.19% DFR 8 0.19% HPPR 8 0.19% GGPPS 8 0.19% FPPS 8 0.19% MVK 8 0.19% CYP80B1 7 0.16% CYP719 7 0.16% DXS 7 0.16% DET2 6 0.14% HMGR 6 0.14% CHI 5 0.12% AACT 5 0.12% SMO1/SMO2 4 0.09% MVD 4 0.09% TDC 3 0.07% CPI1 3 0.07% PMK 3 0.07% HMGS 3 0.07% ODC 2 0.05% CYP80F1 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% MCT/IspD 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% 6OMT_4OMT_SOMT 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 449 19 BAHD (166) View species results
Alkaloid pathway 349 22 7DLGT (58) View species results
Phenylpropanoid pathway 257 13 POD (98) View species results
Flavonoid pathway 242 10 UFGT (162) View species results
Rosmarinic acid pathway 106 7 C4H (30) View species results
Steroid pathway 62 9 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1646 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 322 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
PRvulLH_v2_00029210206480.2 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
PRvulLH_v2_00033320211040.1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
PRvulLH_v2_00033320211040.2 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
PRvulLH_v2_00033320211060.1 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
PRvulLH_v2_00033320211060.2 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
PRvulLH_v2_00033570211410.1 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
PRvulLH_v2_00216710226880.1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PRvulLH_v2_00216720226890.1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
PRvulLH_v2_00388450229580.1 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
PRvulLH_v2_00556440234160.1 Alkaloid NMT medium pass NMT__00059__sp_Q9M571_PEAMT_SPIOL
PRvulLH_v2_00652680240440.1 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI