Primula vulgaris (primula_vulgaris)
Imported from atlas release summary for Primula vulgaris.
2062
Candidate Protein Records
1465
Pathway-Level Records
4309
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4309
Family-Level Calls
C4H
7.36%
BAHD
6.1%
C3'H/CYP98A
5.27%
UGT
4.62%
7DLGT
4.15%
UFGT
4.13%
4CL
4.04%
POD
3.64%
Other Families
60.69%
More Families (97)
CYP76
154
3.57%
T3O
135
3.13%
IFS
134
3.11%
NMT
111
2.58%
F3H
86
2.0%
DWF4/CYP90B1
86
2.0%
STR
77
1.79%
CYP71
76
1.76%
F3'H/CYP75B
73
1.69%
G8O/G8H
72
1.67%
BR6OX2/CYP85A2
72
1.67%
CSE
61
1.42%
CODM/T6ODM
57
1.32%
FNS
57
1.32%
CAD
56
1.3%
PYKS
55
1.28%
H6H
52
1.21%
CAS
48
1.11%
TRI/TRII
46
1.07%
HCT
46
1.07%
F5H/CYP84A
45
1.04%
SMT1/SMT2/SMT3
45
1.04%
IFR
44
1.02%
COMT
44
1.02%
TAT
44
1.02%
TPS
41
0.95%
T16H
40
0.93%
GS
39
0.91%
GES
34
0.79%
F3'5'H/CYP75A
32
0.74%
IO
31
0.72%
LAC
31
0.72%
7DLH
28
0.65%
CHS
28
0.65%
CYP90D1
28
0.65%
ANR
25
0.58%
ANS/LDOX
25
0.58%
SLS
24
0.56%
COR
21
0.49%
SGD
20
0.46%
NCS
20
0.46%
CPD/CYP90A1
20
0.46%
BBE
18
0.42%
PMT
16
0.37%
CCoAOMT
16
0.37%
CCR
15
0.35%
BR6OX1/CYP85A1
15
0.35%
RAS
13
0.3%
CPR
13
0.3%
16OMT
12
0.28%
CNMT
11
0.26%
CYP51G1
11
0.26%
8HGO
10
0.23%
ISY
10
0.23%
ROT3/CYP90C1
10
0.23%
SQS/FDFT1
10
0.23%
TYDC_DDC
9
0.21%
LAMT
9
0.21%
PAL
9
0.21%
SQE
9
0.21%
MPO
8
0.19%
DFR
8
0.19%
HPPR
8
0.19%
GGPPS
8
0.19%
FPPS
8
0.19%
MVK
8
0.19%
CYP80B1
7
0.16%
CYP719
7
0.16%
DXS
7
0.16%
DET2
6
0.14%
HMGR
6
0.14%
CHI
5
0.12%
AACT
5
0.12%
SMO1/SMO2
4
0.09%
MVD
4
0.09%
TDC
3
0.07%
CPI1
3
0.07%
PMK
3
0.07%
HMGS
3
0.07%
ODC
2
0.05%
CYP80F1
2
0.05%
DWF7
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
IDI
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 449 | 19 | BAHD (166) | View species results |
| Alkaloid pathway | 349 | 22 | 7DLGT (58) | View species results |
| Phenylpropanoid pathway | 257 | 13 | POD (98) | View species results |
| Flavonoid pathway | 242 | 10 | UFGT (162) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (30) | View species results |
| Steroid pathway | 62 | 9 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1646 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 322 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| PRvulLH_v2_00019490183760.1 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00019730184340.1 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00020400186310.1 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00023050195350.1 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00023400196060.1 | Alkaloid | TRI/TRII | low | borderline |
| PRvulLH_v2_00042580217690.1 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00042580217690.2 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00642710239270.1 | Alkaloid | TRI/TRII | medium | pass |
| PRvulLH_v2_00000120000510.1 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00004060060560.1 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00004060060560.2 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00010320130350.1 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00013130152880.1 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00018470179320.1 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00018470179340.1 | Alkaloid | TYDC_DDC | medium | borderline |
| PRvulLH_v2_00021670190820.1 | Alkaloid | TYDC_DDC | low | borderline |
| PRvulLH_v2_00021670190820.2 | Alkaloid | TYDC_DDC | low | borderline |
| PRvulLH_v2_00007790105440.1 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| PRvulLH_v2_00000100000250.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00000380003980.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00000530007600.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00001250020540.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00001500024560.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00001500024560.2 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00001990032280.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00001990032280.2 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00002310036500.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00002450038570.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00003000046690.1 | Flavonoid | 4CL | medium | borderline |
| PRvulLH_v2_00003000046990.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00003000047000.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00003190049330.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00003600055980.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00005990086340.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00005990086340.2 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00006030087030.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00006310090250.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00006560092480.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00006560092480.2 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00006880096000.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00006900096450.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00007320100940.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00007680103600.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00007680103610.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00007680104190.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00007890106940.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00009510123170.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00010190128940.1 | Flavonoid | 4CL | medium | pass |
| PRvulLH_v2_00010390131210.1 | Flavonoid | 4CL | low | borderline |
| PRvulLH_v2_00012020144960.1 | Flavonoid | 4CL | medium | pass |