PlantSME Plant secondary metabolism enzyme database

Prunus fruticosa (prunus_fruticosa)

Imported from atlas release summary for Prunus fruticosa.

4671
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.77% Alkaloid pathway 23.64% Phenylpropanoid pathway 23.01% Flavonoid pathway 11.73% Rosmarinic acid pathway 9.68% Steroid pathway 7.17%
Family Distribution
C4H 6.32% C3'H/CYP98A 6.13% BAHD 4.76% IFS 4.5% T3O 3.78% UGT 3.75% 4CL 3.55% CYP76 3.48%
Other Families 63.73%
More Families (98)
POD 402 3.47% UFGT 379 3.27% STR 375 3.24% F3H 370 3.19% 7DLGT 369 3.18% DWF4/CYP90B1 282 2.43% CAD 274 2.36% SGD 262 2.26% CODM/T6ODM 214 1.85% LAC 204 1.76% H6H 194 1.67% BR6OX2/CYP85A2 193 1.67% F3'H/CYP75B 192 1.66% SMT1/SMT2/SMT3 182 1.57% NMT 181 1.56% CAS 181 1.56% COMT 147 1.27% 7DLH 139 1.2% GS 138 1.19% ANR 135 1.16% CYP90D1 116 1.0% TRI/TRII 104 0.9% GES 97 0.84% IFR 97 0.84% TPS 96 0.83% HCT 95 0.82% CYP71 95 0.82% CSE 94 0.81% 16OMT 91 0.79% BR6OX1/CYP85A1 90 0.78% CCR 89 0.77% TAT 86 0.74% RAS 72 0.62% LAMT 71 0.61% T16H 70 0.6% BBE 69 0.6% NCS 67 0.58% IO 65 0.56% 8HGO 64 0.55% PMT 63 0.54% SLS 63 0.54% F3'5'H/CYP75A 57 0.49% ROT3/CYP90C1 49 0.42% PYKS 47 0.41% DFR 47 0.41% G8O/G8H 42 0.36% F5H/CYP84A 40 0.35% COR 36 0.31% FNS 34 0.29% CPD/CYP90A1 32 0.28% ANS/LDOX 30 0.26% CCoAOMT 28 0.24% HPPR 25 0.22% AACT 22 0.19% CYP51G1 21 0.18% ISY 19 0.16% MVD 17 0.15% SQE 16 0.14% CNMT 15 0.13% PAL 15 0.13% DXS 14 0.12% MPO 13 0.11% TYDC_DDC 13 0.11% CYP80B1 12 0.1% FPPS 12 0.1% SQS/FDFT1 11 0.09% DWF7 11 0.09% CYP719 10 0.09% CPR 10 0.09% HMGR 10 0.09% TDC 8 0.07% CHS 8 0.07% 6OMT_4OMT_SOMT 7 0.06% XMT_MXMT_DXMT 7 0.06% MDS/IspF 7 0.06% GGPPS 7 0.06% FLS 6 0.05% CHI 6 0.05% DET2 6 0.05% DWF5 6 0.05% SMO1/SMO2 6 0.05% HDR/IspH 5 0.04% MCT/IspD 4 0.03% MVK 4 0.03% DWF1 3 0.03% HDS/IspG 3 0.03% ODC 2 0.02% CPI1 2 0.02% FK 2 0.02% DXR 2 0.02% IDI 2 0.02% HMGS 2 0.02% PMK 2 0.02% ADC 1 0.01% CYP80F1 1 0.01% HYD1 1 0.01% CMK/IspE 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1157 19 BAHD (450) View species results
Alkaloid pathway 1104 25 SGD (256) View species results
Phenylpropanoid pathway 1075 12 POD (393) View species results
Flavonoid pathway 548 12 UFGT (345) View species results
Rosmarinic acid pathway 452 7 C4H (209) View species results
Steroid pathway 335 13 CAS (162) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4375 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 719 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
prunus_fruticosa_Parm_rna-CURHAP_LOCUS10316_R2 Alkaloid TDC low borderline
prunus_fruticosa_Parm_rna-CURHAP_LOCUS10316_R3 Alkaloid TDC low borderline
prunus_fruticosa_Parm_rna-CURHAP_LOCUS25639_R3 Alkaloid TDC medium borderline
prunus_fruticosa_Pavi_rna-XM_021953455.1_R0 Alkaloid TDC low borderline
prunus_fruticosa_Pavi_rna-XM_021953455.1_R1 Alkaloid TDC low borderline
prunus_fruticosa_Pavi_rna-XM_021953455.1_R2 Alkaloid TDC low borderline
prunus_fruticosa_Pavi_rna-XM_021970521.1_R0 Alkaloid TDC low borderline
prunus_fruticosa_Pper_rna-XM_020569579.1_R0 Alkaloid TDC medium borderline