Pseudobryum cinclidioides (pseudobryum_cinclidioides)
Imported from atlas release summary for Pseudobryum cinclidioides.
658
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
658
Candidate Genes
C4H
7.02%
C3'H/CYP98A
5.93%
BAHD
5.88%
POD
5.08%
CYP76
4.91%
4CL
4.34%
IFS
3.76%
NMT
3.08%
Other Families
60.01%
More Families (94)
STR
47
2.68%
BR6OX2/CYP85A2
44
2.51%
UGT
44
2.51%
7DLGT
42
2.4%
UFGT
42
2.4%
F3H
42
2.4%
T3O
40
2.28%
IFR
34
1.94%
DWF4/CYP90B1
34
1.94%
GS
31
1.77%
PYKS
30
1.71%
F3'H/CYP75B
30
1.71%
CODM/T6ODM
27
1.54%
IO
25
1.43%
H6H
22
1.25%
CHS
20
1.14%
T16H
19
1.08%
CAD
19
1.08%
SMT1/SMT2/SMT3
19
1.08%
PAL
18
1.03%
TRI/TRII
16
0.91%
F3'5'H/CYP75A
16
0.91%
CYP71
16
0.91%
G8O/G8H
15
0.86%
HCT
15
0.86%
LAC
15
0.86%
NCS
14
0.8%
CAS
14
0.8%
CYP90D1
14
0.8%
RAS
13
0.74%
7DLH
12
0.68%
FNS
12
0.68%
SLS
10
0.57%
CPD/CYP90A1
10
0.57%
CCR
9
0.51%
CSE
9
0.51%
CNMT
8
0.46%
MPO
8
0.46%
COMT
8
0.46%
16OMT
7
0.4%
ANR
7
0.4%
DFR
7
0.4%
BR6OX1/CYP85A1
7
0.4%
GGPPS
7
0.4%
AACT
7
0.4%
LAMT
6
0.34%
8HGO
6
0.34%
TDC
6
0.34%
SGD
6
0.34%
COR
6
0.34%
CPR
6
0.34%
BBE
5
0.29%
TAT
5
0.29%
DWF5
5
0.29%
TPS
5
0.29%
CYP80F1
4
0.23%
CYP719
4
0.23%
GES
4
0.23%
CYP80B1
4
0.23%
ANS/LDOX
4
0.23%
F5H/CYP84A
4
0.23%
SQS/FDFT1
4
0.23%
MVK
4
0.23%
ADC
3
0.17%
PMT
3
0.17%
DET2
3
0.17%
SQE
3
0.17%
HDS/IspG
3
0.17%
IDI
3
0.17%
CMK/IspE
3
0.17%
6OMT_4OMT_SOMT
2
0.11%
ISY
2
0.11%
FLS
2
0.11%
CHI
2
0.11%
CCoAOMT
2
0.11%
DWF1
2
0.11%
CYP51G1
2
0.11%
HYD1
2
0.11%
SMO1/SMO2
2
0.11%
MCT/IspD
2
0.11%
DXR
2
0.11%
MVD
2
0.11%
DXS
2
0.11%
HDR/IspH
2
0.11%
TYDC_DDC
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
ROT3/CYP90C1
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
MDS/IspF
1
0.06%
FPPS
1
0.06%
HMGR
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 182 | 21 | BAHD (70) | View species results |
| Phenylpropanoid pathway | 149 | 12 | POD (82) | View species results |
| Alkaloid pathway | 135 | 17 | 7DLGT (24) | View species results |
| Flavonoid pathway | 93 | 10 | UFGT (39) | View species results |
| Rosmarinic acid pathway | 62 | 7 | C4H (30) | View species results |
| Steroid pathway | 37 | 12 | CAS (12) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 690 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 131 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pcin1939500154930 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Pcin1945680161520 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Pcin1951340167840 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Pcin1952770169370 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Pcin1968740189080 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Pcin1982390207210 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Pcin2000310237280 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Pcin2001510239600 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Pcin2016640267260 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Pcin2024760284200 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Pcin2027100288220 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Pcin1926480143870 | Steroid | SQE | low | borderline |
| Pcin1957050174350 | Steroid | SQE | medium | pass |
| Pcin1992270223540 | Steroid | SQE | low | borderline |
| Pcin1891890117030 | Steroid | SQS/FDFT1 | low | borderline |
| Pcin1897140120170 | Steroid | SQS/FDFT1 | high | pass |
| Pcin1915590133650 | Steroid | SQS/FDFT1 | medium | pass |
| Pcin2005870246720 | Steroid | SQS/FDFT1 | high | pass |