PlantSME Plant secondary metabolism enzyme database

Ptychomitrium wilsonii (ptychomitrium_wilsonii)

Imported from atlas release summary for Ptychomitrium wilsonii.

572
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.45% Terpenoid pathway 22.73% Alkaloid pathway 20.45% Flavonoid pathway 12.24% Rosmarinic acid pathway 10.49% Steroid pathway 6.64%
Family Distribution
C4H 6.25% BAHD 6.19% POD 6.13% C3'H/CYP98A 5.81% 4CL 4.55% CYP76 4.23% NMT 3.85% IFS 2.97%
Other Families 60.01%
More Families (95)
T3O 44 2.78% STR 39 2.46% IFR 37 2.34% BR6OX2/CYP85A2 36 2.27% DWF4/CYP90B1 34 2.15% PYKS 33 2.08% F3'H/CYP75B 33 2.08% F3H 33 2.08% PAL 30 1.9% GS 29 1.83% CODM/T6ODM 28 1.77% 7DLGT 27 1.71% UGT 26 1.64% IO 24 1.52% UFGT 23 1.45% CYP71 23 1.45% CHS 19 1.2% SMT1/SMT2/SMT3 19 1.2% CAD 18 1.14% HCT 16 1.01% RAS 16 1.01% TRI/TRII 12 0.76% T16H 12 0.76% CAS 12 0.76% G8O/G8H 11 0.69% SGD 10 0.63% H6H 10 0.63% F3'5'H/CYP75A 10 0.63% CSE 10 0.63% COMT 10 0.63% 8HGO 9 0.57% SLS 9 0.57% FNS 9 0.57% LAC 9 0.57% CCR 9 0.57% TDC 8 0.51% NCS 8 0.51% ANR 8 0.51% CNMT 7 0.44% COR 7 0.44% 16OMT 7 0.44% F5H/CYP84A 7 0.44% CYP90D1 7 0.44% CPD/CYP90A1 7 0.44% ROT3/CYP90C1 7 0.44% AACT 7 0.44% SQS/FDFT1 6 0.38% BR6OX1/CYP85A1 6 0.38% SQE 6 0.38% GGPPS 6 0.38% CYP719 5 0.32% PMT 5 0.32% CPR 5 0.32% DET2 5 0.32% BBE 4 0.25% LAMT 4 0.25% 7DLH 4 0.25% MPO 4 0.25% ANS/LDOX 4 0.25% SMO1/SMO2 4 0.25% MCT/IspD 4 0.25% HDS/IspG 4 0.25% MVK 4 0.25% 6OMT_4OMT_SOMT 3 0.19% CYP80B1 3 0.19% CHI 3 0.19% DFR 3 0.19% FLS 3 0.19% TAT 3 0.19% DWF5 3 0.19% HMGR 3 0.19% MVD 3 0.19% ISY 2 0.13% ADC 2 0.13% CCoAOMT 2 0.13% CYP51G1 2 0.13% HYD1 2 0.13% IDI 2 0.13% MDS/IspF 2 0.13% DXR 2 0.13% TPS 2 0.13% FPPS 2 0.13% HMGS 2 0.13% CYP80F1 1 0.06% TYDC_DDC 1 0.06% GES 1 0.06% HPPR 1 0.06% DWF1 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% HDR/IspH 1 0.06% DXS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 157 11 POD (87) View species results
Terpenoid pathway 130 19 BAHD (57) View species results
Alkaloid pathway 117 16 NMT (23) View species results
Flavonoid pathway 70 9 UFGT (21) View species results
Rosmarinic acid pathway 60 7 C4H (25) View species results
Steroid pathway 38 12 CAS (11) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 590 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 130 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Pwilscaffold_100028890 Alkaloid SGD low borderline
Pwilscaffold_100040520 Alkaloid SGD low borderline
Pwilscaffold_10019720 Alkaloid SGD low borderline
Pwilscaffold_10020540 Alkaloid SGD medium pass
Pwilscaffold_120099380 Alkaloid SGD medium pass
Pwilscaffold_20124370 Alkaloid SGD low borderline
Pwilscaffold_70205440 Alkaloid SGD low borderline
Pwilscaffold_90231160 Alkaloid SGD medium pass
Pwilscaffold_90240610 Alkaloid SGD medium pass
Pwilscaffold_90244720 Alkaloid SGD medium pass