Ptychomitrium wilsonii (ptychomitrium_wilsonii)
Imported from atlas release summary for Ptychomitrium wilsonii.
572
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
572
Candidate Genes
C4H
6.25%
BAHD
6.19%
POD
6.13%
C3'H/CYP98A
5.81%
4CL
4.55%
CYP76
4.23%
NMT
3.85%
IFS
2.97%
Other Families
60.01%
More Families (95)
T3O
44
2.78%
STR
39
2.46%
IFR
37
2.34%
BR6OX2/CYP85A2
36
2.27%
DWF4/CYP90B1
34
2.15%
PYKS
33
2.08%
F3'H/CYP75B
33
2.08%
F3H
33
2.08%
PAL
30
1.9%
GS
29
1.83%
CODM/T6ODM
28
1.77%
7DLGT
27
1.71%
UGT
26
1.64%
IO
24
1.52%
UFGT
23
1.45%
CYP71
23
1.45%
CHS
19
1.2%
SMT1/SMT2/SMT3
19
1.2%
CAD
18
1.14%
HCT
16
1.01%
RAS
16
1.01%
TRI/TRII
12
0.76%
T16H
12
0.76%
CAS
12
0.76%
G8O/G8H
11
0.69%
SGD
10
0.63%
H6H
10
0.63%
F3'5'H/CYP75A
10
0.63%
CSE
10
0.63%
COMT
10
0.63%
8HGO
9
0.57%
SLS
9
0.57%
FNS
9
0.57%
LAC
9
0.57%
CCR
9
0.57%
TDC
8
0.51%
NCS
8
0.51%
ANR
8
0.51%
CNMT
7
0.44%
COR
7
0.44%
16OMT
7
0.44%
F5H/CYP84A
7
0.44%
CYP90D1
7
0.44%
CPD/CYP90A1
7
0.44%
ROT3/CYP90C1
7
0.44%
AACT
7
0.44%
SQS/FDFT1
6
0.38%
BR6OX1/CYP85A1
6
0.38%
SQE
6
0.38%
GGPPS
6
0.38%
CYP719
5
0.32%
PMT
5
0.32%
CPR
5
0.32%
DET2
5
0.32%
BBE
4
0.25%
LAMT
4
0.25%
7DLH
4
0.25%
MPO
4
0.25%
ANS/LDOX
4
0.25%
SMO1/SMO2
4
0.25%
MCT/IspD
4
0.25%
HDS/IspG
4
0.25%
MVK
4
0.25%
6OMT_4OMT_SOMT
3
0.19%
CYP80B1
3
0.19%
CHI
3
0.19%
DFR
3
0.19%
FLS
3
0.19%
TAT
3
0.19%
DWF5
3
0.19%
HMGR
3
0.19%
MVD
3
0.19%
ISY
2
0.13%
ADC
2
0.13%
CCoAOMT
2
0.13%
CYP51G1
2
0.13%
HYD1
2
0.13%
IDI
2
0.13%
MDS/IspF
2
0.13%
DXR
2
0.13%
TPS
2
0.13%
FPPS
2
0.13%
HMGS
2
0.13%
CYP80F1
1
0.06%
TYDC_DDC
1
0.06%
GES
1
0.06%
HPPR
1
0.06%
DWF1
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
HDR/IspH
1
0.06%
DXS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 157 | 11 | POD (87) | View species results |
| Terpenoid pathway | 130 | 19 | BAHD (57) | View species results |
| Alkaloid pathway | 117 | 16 | NMT (23) | View species results |
| Flavonoid pathway | 70 | 9 | UFGT (21) | View species results |
| Rosmarinic acid pathway | 60 | 7 | C4H (25) | View species results |
| Steroid pathway | 38 | 12 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 590 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 130 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pwilscaffold_100032570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_100034000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_100035620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_100038060 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_10006470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_10008960 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_10008970 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_10009950 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_10021420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_110068490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_110073820 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_110075830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_110077300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_120093000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_120096530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_120100350 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_120103250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_120106620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_160110670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_20123740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_20126480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_30138090 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_40154570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_40160580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_50165300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_50166370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_50169670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_50170180 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_50173470 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_50176630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_50181140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_60181800 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_60187090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_60195030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_60197660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_70201920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pwilscaffold_70206850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_70208530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pwilscaffold_90246220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |