Ptychomitrium wilsonii (ptychomitrium_wilsonii)
Imported from atlas release summary for Ptychomitrium wilsonii.
874
Candidate Protein Records
572
Pathway-Level Records
1583
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1583
Family-Level Calls
C4H
6.25%
BAHD
6.19%
POD
6.13%
C3'H/CYP98A
5.81%
4CL
4.55%
CYP76
4.23%
NMT
3.85%
IFS
2.97%
Other Families
60.01%
More Families (95)
T3O
44
2.78%
STR
39
2.46%
IFR
37
2.34%
BR6OX2/CYP85A2
36
2.27%
DWF4/CYP90B1
34
2.15%
PYKS
33
2.08%
F3'H/CYP75B
33
2.08%
F3H
33
2.08%
PAL
30
1.9%
GS
29
1.83%
CODM/T6ODM
28
1.77%
7DLGT
27
1.71%
UGT
26
1.64%
IO
24
1.52%
UFGT
23
1.45%
CYP71
23
1.45%
CHS
19
1.2%
SMT1/SMT2/SMT3
19
1.2%
CAD
18
1.14%
HCT
16
1.01%
RAS
16
1.01%
TRI/TRII
12
0.76%
T16H
12
0.76%
CAS
12
0.76%
G8O/G8H
11
0.69%
SGD
10
0.63%
H6H
10
0.63%
F3'5'H/CYP75A
10
0.63%
CSE
10
0.63%
COMT
10
0.63%
8HGO
9
0.57%
SLS
9
0.57%
FNS
9
0.57%
LAC
9
0.57%
CCR
9
0.57%
TDC
8
0.51%
NCS
8
0.51%
ANR
8
0.51%
CNMT
7
0.44%
COR
7
0.44%
16OMT
7
0.44%
F5H/CYP84A
7
0.44%
CYP90D1
7
0.44%
CPD/CYP90A1
7
0.44%
ROT3/CYP90C1
7
0.44%
AACT
7
0.44%
SQS/FDFT1
6
0.38%
BR6OX1/CYP85A1
6
0.38%
SQE
6
0.38%
GGPPS
6
0.38%
CYP719
5
0.32%
PMT
5
0.32%
CPR
5
0.32%
DET2
5
0.32%
BBE
4
0.25%
LAMT
4
0.25%
7DLH
4
0.25%
MPO
4
0.25%
ANS/LDOX
4
0.25%
SMO1/SMO2
4
0.25%
MCT/IspD
4
0.25%
HDS/IspG
4
0.25%
MVK
4
0.25%
6OMT_4OMT_SOMT
3
0.19%
CYP80B1
3
0.19%
CHI
3
0.19%
DFR
3
0.19%
FLS
3
0.19%
TAT
3
0.19%
DWF5
3
0.19%
HMGR
3
0.19%
MVD
3
0.19%
ISY
2
0.13%
ADC
2
0.13%
CCoAOMT
2
0.13%
CYP51G1
2
0.13%
HYD1
2
0.13%
IDI
2
0.13%
MDS/IspF
2
0.13%
DXR
2
0.13%
TPS
2
0.13%
FPPS
2
0.13%
HMGS
2
0.13%
CYP80F1
1
0.06%
TYDC_DDC
1
0.06%
GES
1
0.06%
HPPR
1
0.06%
DWF1
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
HDR/IspH
1
0.06%
DXS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 157 | 11 | POD (87) | View species results |
| Terpenoid pathway | 130 | 19 | BAHD (57) | View species results |
| Alkaloid pathway | 117 | 16 | NMT (23) | View species results |
| Flavonoid pathway | 70 | 9 | UFGT (21) | View species results |
| Rosmarinic acid pathway | 60 | 7 | C4H (25) | View species results |
| Steroid pathway | 38 | 12 | CAS (11) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 590 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 130 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Pwilscaffold_50169310 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_50170930 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_50172510 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_50174200 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_50178880 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60186480 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_60186490 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_60186500 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60190640 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60194020 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60195050 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60195090 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60197350 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60199720 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_60200200 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_70209450 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_80218600 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_80220870 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_80222920 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_80223860 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_80226800 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_90232540 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_90237390 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_90238820 | Rosmarinic Acid | C4H | low | borderline |
| Pwilscaffold_90239130 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_90239230 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_90241300 | Rosmarinic Acid | C4H | medium | pass |
| Pwilscaffold_10018830 | Rosmarinic Acid | CPR | medium | pass |
| Pwilscaffold_10024600 | Rosmarinic Acid | CPR | medium | pass |
| Pwilscaffold_110065780 | Rosmarinic Acid | CPR | medium | pass |
| Pwilscaffold_110086300 | Rosmarinic Acid | CPR | low | borderline |
| Pwilscaffold_90241190 | Rosmarinic Acid | CPR | medium | pass |
| Pwilscaffold_20112680 | Rosmarinic Acid | HPPR | medium | pass |
| Pwilscaffold_10002060 | Rosmarinic Acid | PAL | high | pass |
| Pwilscaffold_100027980 | Rosmarinic Acid | PAL | low | borderline |
| Pwilscaffold_100031800 | Rosmarinic Acid | PAL | medium | pass |
| Pwilscaffold_100055300 | Rosmarinic Acid | PAL | medium | pass |
| Pwilscaffold_100055330 | Rosmarinic Acid | PAL | medium | pass |
| Pwilscaffold_100060140 | Rosmarinic Acid | PAL | medium | pass |
| Pwilscaffold_110066820 | Rosmarinic Acid | PAL | medium | pass |
| Pwilscaffold_110076050 | Rosmarinic Acid | PAL | high | pass |
| Pwilscaffold_160110770 | Rosmarinic Acid | PAL | high | pass |
| Pwilscaffold_20119960 | Rosmarinic Acid | PAL | medium | pass |
| Pwilscaffold_10005060 | Rosmarinic Acid | RAS | medium | pass |
| Pwilscaffold_110062880 | Rosmarinic Acid | RAS | low | borderline |
| Pwilscaffold_110072020 | Rosmarinic Acid | RAS | medium | pass |
| Pwilscaffold_110081230 | Rosmarinic Acid | RAS | low | borderline |
| Pwilscaffold_110084290 | Rosmarinic Acid | RAS | low | borderline |
| Pwilscaffold_30144150 | Rosmarinic Acid | RAS | low | borderline |
| Pwilscaffold_40158050 | Rosmarinic Acid | RAS | medium | pass |