PlantSME Plant secondary metabolism enzyme database

Puccinellia tenuiflora (puccinellia_tenuiflora)

Imported from atlas release summary for Puccinellia tenuiflora.

1897
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.88% Terpenoid pathway 25.14% Alkaloid pathway 20.72% Flavonoid pathway 13.6% Rosmarinic acid pathway 9.86% Steroid pathway 4.8%
Family Distribution
C3'H/CYP98A 6.66% POD 6.21% C4H 6.0% BAHD 5.64% 4CL 3.87% IFS 3.78% T3O 3.49% UGT 3.17%
Other Families 61.18%
More Families (97)
UFGT 147 3.11% 7DLGT 143 3.02% CYP76 134 2.83% DWF4/CYP90B1 124 2.62% F3'H/CYP75B 105 2.22% BR6OX2/CYP85A2 102 2.16% F3H 101 2.13% NMT 92 1.94% STR 82 1.73% CAD 82 1.73% CYP71 82 1.73% CODM/T6ODM 70 1.48% SMT1/SMT2/SMT3 67 1.42% LAC 58 1.23% PYKS 57 1.2% SLS 57 1.2% CAS 48 1.01% ANR 46 0.97% CCR 46 0.97% SGD 45 0.95% H6H 44 0.93% HCT 44 0.93% RAS 44 0.93% IFR 43 0.91% CSE 43 0.91% PAL 42 0.89% COMT 42 0.89% CYP90D1 42 0.89% PMT 40 0.85% TRI/TRII 36 0.76% TPS 35 0.74% T16H 34 0.72% GES 33 0.7% FNS 33 0.7% GS 32 0.68% CHS 32 0.68% DFR 32 0.68% G8O/G8H 31 0.66% NCS 30 0.63% CYP51G1 28 0.59% 16OMT 26 0.55% ANS/LDOX 26 0.55% 8HGO 23 0.49% F3'5'H/CYP75A 23 0.49% BBE 20 0.42% CNMT 19 0.4% CPD/CYP90A1 19 0.4% 7DLH 18 0.38% IO 18 0.38% F5H/CYP84A 15 0.32% BR6OX1/CYP85A1 14 0.3% AACT 14 0.3% COR 13 0.27% TAT 12 0.25% CPR 12 0.25% FPPS 11 0.23% MPO 10 0.21% CYP719 9 0.19% CYP80B1 8 0.17% CCoAOMT 8 0.17% HPPR 8 0.17% ROT3/CYP90C1 8 0.17% TYDC_DDC 7 0.15% SQS/FDFT1 7 0.15% MCT/IspD 7 0.15% MVK 6 0.13% HMGR 6 0.13% ISY 5 0.11% LAMT 5 0.11% XMT_MXMT_DXMT 5 0.11% SMO1/SMO2 5 0.11% DWF5 5 0.11% DWF1 5 0.11% HMGS 5 0.11% MVD 5 0.11% DXS 5 0.11% GGPPS 5 0.11% CYP80F1 4 0.08% 6OMT_4OMT_SOMT 4 0.08% FLS 4 0.08% DET2 4 0.08% HYD1 4 0.08% IDI 4 0.08% ODC 3 0.06% CHI 3 0.06% DWF7 2 0.04% FK 2 0.04% PMK 2 0.04% HDR/IspH 2 0.04% HDS/IspG 2 0.04% DXR 2 0.04% CMK/IspE 2 0.04% GPPS 2 0.04% TDC 1 0.02% SQE 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 491 11 POD (269) View species results
Terpenoid pathway 477 20 BAHD (206) View species results
Alkaloid pathway 393 22 7DLGT (71) View species results
Flavonoid pathway 258 13 UFGT (137) View species results
Rosmarinic acid pathway 187 7 C4H (89) View species results
Steroid pathway 91 12 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1818 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 355 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
Pten02G0019690.1 Alkaloid CYP719 medium borderline CYP719__00005__sp_B5UAQ8_C7195_ESCCA
Pten02G0019840.1 Alkaloid CYP719 medium borderline CYP719__00005__sp_B5UAQ8_C7195_ESCCA
Pten03G0019590.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Pten03G0043800.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Pten03G0049680.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Pten03G0050300.1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
Pten04G0042330.1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
Pten04G0042400.1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
PtenContigUN0001190.1 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE