PlantSME Plant secondary metabolism enzyme database

Quercus dentata (quercus_dentata)

Imported from atlas release summary for Quercus dentata.

2300
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.26% Alkaloid pathway 23.61% Phenylpropanoid pathway 19.74% Flavonoid pathway 12.43% Steroid pathway 9.22% Rosmarinic acid pathway 7.74%
Family Distribution
C4H 6.71% C3'H/CYP98A 6.36% UGT 4.66% 7DLGT 4.32% CYP76 4.28% BAHD 4.11% UFGT 3.94% IFS 3.65%
Other Families 61.97%
More Families (95)
T3O 201 3.42% DWF4/CYP90B1 182 3.09% POD 175 2.97% 4CL 171 2.91% F3H 154 2.62% STR 140 2.38% CAD 136 2.31% F3'H/CYP75B 131 2.23% CAS 120 2.04% BR6OX2/CYP85A2 103 1.75% NMT 94 1.6% H6H 92 1.56% SMT1/SMT2/SMT3 89 1.51% GS 88 1.5% CODM/T6ODM 87 1.48% CYP71 76 1.29% TRI/TRII 74 1.26% SGD 67 1.14% T16H 65 1.1% LAC 65 1.1% TPS 62 1.05% GES 60 1.02% COMT 58 0.99% SLS 55 0.93% F3'5'H/CYP75A 53 0.9% IFR 53 0.9% CYP90D1 51 0.87% G8O/G8H 49 0.83% FNS 44 0.75% 16OMT 42 0.71% 7DLH 39 0.66% ANR 36 0.61% BR6OX1/CYP85A1 35 0.59% CSE 32 0.54% 8HGO 30 0.51% NCS 30 0.51% PYKS 27 0.46% F5H/CYP84A 27 0.46% TAT 27 0.46% IO 24 0.41% PMT 24 0.41% HCT 24 0.41% CPD/CYP90A1 24 0.41% LAMT 22 0.37% CCR 22 0.37% CCoAOMT 22 0.37% RAS 21 0.36% ANS/LDOX 20 0.34% DFR 19 0.32% BBE 18 0.31% COR 17 0.29% CYP51G1 17 0.29% PAL 15 0.25% ISY 14 0.24% SQE 14 0.24% FPPS 14 0.24% CYP80B1 13 0.22% CNMT 13 0.22% HPPR 13 0.22% MPO 12 0.2% SQS/FDFT1 12 0.2% ROT3/CYP90C1 11 0.19% HDR/IspH 11 0.19% CYP719 10 0.17% TDC 8 0.14% TYDC_DDC 6 0.1% DXS 6 0.1% AACT 6 0.1% XMT_MXMT_DXMT 5 0.08% CHS 5 0.08% DET2 5 0.08% GGPPS 5 0.08% MCT/IspD 5 0.08% MVK 5 0.08% MVD 5 0.08% 6OMT_4OMT_SOMT 4 0.07% CPR 4 0.07% HMGR 4 0.07% CHI 3 0.05% DWF7 3 0.05% ODC 2 0.03% CYP80F1 2 0.03% CPI1 2 0.03% SMO1/SMO2 2 0.03% CMK/IspE 2 0.03% HDS/IspG 2 0.03% HMGS 2 0.03% DWF1 1 0.02% HYD1 1 0.02% DWF5 1 0.02% FK 1 0.02% IDI 1 0.02% DXR 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 627 18 UGT (241) View species results
Alkaloid pathway 543 20 7DLGT (146) View species results
Phenylpropanoid pathway 454 11 POD (168) View species results
Flavonoid pathway 286 11 UFGT (207) View species results
Steroid pathway 212 12 CAS (110) View species results
Rosmarinic acid pathway 178 7 C4H (96) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2404 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 287 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
quercus_dentata_GWHPBRAD004941 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
quercus_dentata_GWHPBRAD021814 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD021815 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
quercus_dentata_GWHPBRAD021816 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD024832 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD004941 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
quercus_dentata_GWHPBRAD021814 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD021815 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
quercus_dentata_GWHPBRAD021816 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD024832 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD004941 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
quercus_dentata_GWHPBRAD021814 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD021815 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
quercus_dentata_GWHPBRAD021816 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
quercus_dentata_GWHPBRAD024832 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR