PlantSME Plant secondary metabolism enzyme database

Raddia distichophylla (raddia_distichophylla)

Imported from atlas release summary for Raddia distichophylla.

1293
Family-Level Assignments
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.77% Alkaloid pathway 21.96% Phenylpropanoid pathway 20.49% Flavonoid pathway 16.32% Rosmarinic acid pathway 7.5% Steroid pathway 4.95%
Family Distribution
BAHD 6.35% C4H 5.81% UGT 5.78% UFGT 5.17% 7DLGT 5.1% C3'H/CYP98A 4.8% POD 4.33% 4CL 3.73%
Other Families 58.93%
More Families (94)
CYP76 91 3.06% IFS 76 2.55% F3'H/CYP75B 69 2.32% F3H 69 2.32% T3O 66 2.22% NMT 54 1.81% G8O/G8H 51 1.71% STR 49 1.65% DWF4/CYP90B1 47 1.58% BR6OX2/CYP85A2 46 1.54% SMT1/SMT2/SMT3 44 1.48% CODM/T6ODM 42 1.41% RAS 40 1.34% SLS 37 1.24% CAD 37 1.24% PYKS 35 1.18% TRI/TRII 35 1.18% CSE 35 1.18% CAS 35 1.18% PAL 33 1.11% HCT 33 1.11% H6H 31 1.04% LAC 31 1.04% PMT 30 1.01% FNS 29 0.97% TPS 29 0.97% ANR 27 0.91% COMT 27 0.91% CCR 26 0.87% 16OMT 25 0.84% GES 23 0.77% IFR 23 0.77% SGD 20 0.67% CYP90D1 20 0.67% CYP71 18 0.6% F3'5'H/CYP75A 17 0.57% TAT 15 0.5% 7DLH 14 0.47% GS 14 0.47% CPD/CYP90A1 14 0.47% DFR 13 0.44% IO 11 0.37% LAMT 11 0.37% NCS 11 0.37% 8HGO 11 0.37% COR 10 0.34% CYP80B1 10 0.34% CHS 10 0.34% F5H/CYP84A 10 0.34% ROT3/CYP90C1 10 0.34% BBE 9 0.3% CPR 9 0.3% BR6OX1/CYP85A1 9 0.3% FPPS 9 0.3% CNMT 8 0.27% T16H 8 0.27% ANS/LDOX 8 0.27% CCoAOMT 8 0.27% TYDC_DDC 7 0.24% CYP719 6 0.2% MPO 6 0.2% XMT_MXMT_DXMT 6 0.2% FLS 6 0.2% HPPR 6 0.2% SMO1/SMO2 6 0.2% HMGS 6 0.2% AACT 6 0.2% ISY 5 0.17% TDC 5 0.17% CYP51G1 4 0.13% DWF1 4 0.13% SQS/FDFT1 4 0.13% MVK 4 0.13% GGPPS 4 0.13% DXS 4 0.13% CPI1 3 0.1% MVD 3 0.1% ADC 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CYP80F1 2 0.07% CHI 2 0.07% HYD1 2 0.07% DWF7 2 0.07% DET2 2 0.07% CMK/IspE 2 0.07% MCT/IspD 2 0.07% PMK 2 0.07% HMGR 2 0.07% ODC 1 0.03% FK 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 372 16 UGT (146) View species results
Alkaloid pathway 284 24 7DLGT (72) View species results
Phenylpropanoid pathway 265 13 POD (108) View species results
Flavonoid pathway 211 13 UFGT (141) View species results
Rosmarinic acid pathway 97 7 4CL (23) View species results
Steroid pathway 64 11 SMT1/SMT2/SMT3 (24) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 952 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
Reset
Gene Pathway Family Confidence Status Best Target
RdisGWHAAKD000382140169510.1 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
RdisGWHAAKD000382170172550.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
RdisGWHAAKD000382230178080.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
RdisGWHAAKD000382230178090.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
RdisGWHAAKD000382380193110.1 Rosmarinic Acid 4CL medium pass 4CL__00006__sp_P17814_4CL1_ORYSJ
RdisGWHAAKD000382480203500.1 Rosmarinic Acid 4CL medium pass 4CL__00009__sp_Q67W82_4CL4_ORYSJ
RdisGWHAAKD000382530209380.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
RdisGWHAAKD000382530209390.1 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
RdisGWHAAKD000382590219100.1 Rosmarinic Acid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
RdisGWHAAKD000382610226000.1 Rosmarinic Acid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
RdisGWHAAKD000382620226730.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY