PlantSME Plant secondary metabolism enzyme database

Raddia distichophylla (raddia_distichophylla)

Imported from atlas release summary for Raddia distichophylla.

1293
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.77% Alkaloid pathway 21.96% Phenylpropanoid pathway 20.49% Flavonoid pathway 16.32% Rosmarinic acid pathway 7.5% Steroid pathway 4.95%
Family Distribution
BAHD 6.35% C4H 5.81% UGT 5.78% UFGT 5.17% 7DLGT 5.1% C3'H/CYP98A 4.8% POD 4.33% 4CL 3.73%
Other Families 58.93%
More Families (94)
CYP76 91 3.06% IFS 76 2.55% F3'H/CYP75B 69 2.32% F3H 69 2.32% T3O 66 2.22% NMT 54 1.81% G8O/G8H 51 1.71% STR 49 1.65% DWF4/CYP90B1 47 1.58% BR6OX2/CYP85A2 46 1.54% SMT1/SMT2/SMT3 44 1.48% CODM/T6ODM 42 1.41% RAS 40 1.34% SLS 37 1.24% CAD 37 1.24% PYKS 35 1.18% TRI/TRII 35 1.18% CSE 35 1.18% CAS 35 1.18% PAL 33 1.11% HCT 33 1.11% H6H 31 1.04% LAC 31 1.04% PMT 30 1.01% FNS 29 0.97% TPS 29 0.97% ANR 27 0.91% COMT 27 0.91% CCR 26 0.87% 16OMT 25 0.84% GES 23 0.77% IFR 23 0.77% SGD 20 0.67% CYP90D1 20 0.67% CYP71 18 0.6% F3'5'H/CYP75A 17 0.57% TAT 15 0.5% 7DLH 14 0.47% GS 14 0.47% CPD/CYP90A1 14 0.47% DFR 13 0.44% IO 11 0.37% LAMT 11 0.37% NCS 11 0.37% 8HGO 11 0.37% COR 10 0.34% CYP80B1 10 0.34% CHS 10 0.34% F5H/CYP84A 10 0.34% ROT3/CYP90C1 10 0.34% BBE 9 0.3% CPR 9 0.3% BR6OX1/CYP85A1 9 0.3% FPPS 9 0.3% CNMT 8 0.27% T16H 8 0.27% ANS/LDOX 8 0.27% CCoAOMT 8 0.27% TYDC_DDC 7 0.24% CYP719 6 0.2% MPO 6 0.2% XMT_MXMT_DXMT 6 0.2% FLS 6 0.2% HPPR 6 0.2% SMO1/SMO2 6 0.2% HMGS 6 0.2% AACT 6 0.2% ISY 5 0.17% TDC 5 0.17% CYP51G1 4 0.13% DWF1 4 0.13% SQS/FDFT1 4 0.13% MVK 4 0.13% GGPPS 4 0.13% DXS 4 0.13% CPI1 3 0.1% MVD 3 0.1% ADC 2 0.07% 6OMT_4OMT_SOMT 2 0.07% CYP80F1 2 0.07% CHI 2 0.07% HYD1 2 0.07% DWF7 2 0.07% DET2 2 0.07% CMK/IspE 2 0.07% MCT/IspD 2 0.07% PMK 2 0.07% HMGR 2 0.07% ODC 1 0.03% FK 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 16 UGT (146) View species results
Alkaloid pathway 284 24 7DLGT (72) View species results
Phenylpropanoid pathway 265 13 POD (108) View species results
Flavonoid pathway 211 13 UFGT (141) View species results
Rosmarinic acid pathway 97 7 4CL (23) View species results
Steroid pathway 64 11 SMT1/SMT2/SMT3 (24) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 952 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
RdisGWHAAKD000121470013640.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00004__sp_Q94EE9_TYDC_ORYSJ
RdisGWHAAKD000188310038720.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
RdisGWHAAKD000203130044410.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
RdisGWHAAKD000203130044420.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
RdisGWHAAKD000210990049180.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
RdisGWHAAKD000298420101250.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00004__sp_Q94EE9_TYDC_ORYSJ
RdisGWHAAKD000382180173780.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO