Raddia distichophylla (raddia_distichophylla)
Imported from atlas release summary for Raddia distichophylla.
1293
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1293
Candidate Genes
BAHD
6.35%
C4H
5.81%
UGT
5.78%
UFGT
5.17%
7DLGT
5.1%
C3'H/CYP98A
4.8%
POD
4.33%
4CL
3.73%
Other Families
58.93%
More Families (94)
CYP76
91
3.06%
IFS
76
2.55%
F3'H/CYP75B
69
2.32%
F3H
69
2.32%
T3O
66
2.22%
NMT
54
1.81%
G8O/G8H
51
1.71%
STR
49
1.65%
DWF4/CYP90B1
47
1.58%
BR6OX2/CYP85A2
46
1.54%
SMT1/SMT2/SMT3
44
1.48%
CODM/T6ODM
42
1.41%
RAS
40
1.34%
SLS
37
1.24%
CAD
37
1.24%
PYKS
35
1.18%
TRI/TRII
35
1.18%
CSE
35
1.18%
CAS
35
1.18%
PAL
33
1.11%
HCT
33
1.11%
H6H
31
1.04%
LAC
31
1.04%
PMT
30
1.01%
FNS
29
0.97%
TPS
29
0.97%
ANR
27
0.91%
COMT
27
0.91%
CCR
26
0.87%
16OMT
25
0.84%
GES
23
0.77%
IFR
23
0.77%
SGD
20
0.67%
CYP90D1
20
0.67%
CYP71
18
0.6%
F3'5'H/CYP75A
17
0.57%
TAT
15
0.5%
7DLH
14
0.47%
GS
14
0.47%
CPD/CYP90A1
14
0.47%
DFR
13
0.44%
IO
11
0.37%
LAMT
11
0.37%
NCS
11
0.37%
8HGO
11
0.37%
COR
10
0.34%
CYP80B1
10
0.34%
CHS
10
0.34%
F5H/CYP84A
10
0.34%
ROT3/CYP90C1
10
0.34%
BBE
9
0.3%
CPR
9
0.3%
BR6OX1/CYP85A1
9
0.3%
FPPS
9
0.3%
CNMT
8
0.27%
T16H
8
0.27%
ANS/LDOX
8
0.27%
CCoAOMT
8
0.27%
TYDC_DDC
7
0.24%
CYP719
6
0.2%
MPO
6
0.2%
XMT_MXMT_DXMT
6
0.2%
FLS
6
0.2%
HPPR
6
0.2%
SMO1/SMO2
6
0.2%
HMGS
6
0.2%
AACT
6
0.2%
ISY
5
0.17%
TDC
5
0.17%
CYP51G1
4
0.13%
DWF1
4
0.13%
SQS/FDFT1
4
0.13%
MVK
4
0.13%
GGPPS
4
0.13%
DXS
4
0.13%
CPI1
3
0.1%
MVD
3
0.1%
ADC
2
0.07%
6OMT_4OMT_SOMT
2
0.07%
CYP80F1
2
0.07%
CHI
2
0.07%
HYD1
2
0.07%
DWF7
2
0.07%
DET2
2
0.07%
CMK/IspE
2
0.07%
MCT/IspD
2
0.07%
PMK
2
0.07%
HMGR
2
0.07%
ODC
1
0.03%
FK
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 372 | 16 | UGT (146) | View species results |
| Alkaloid pathway | 284 | 24 | 7DLGT (72) | View species results |
| Phenylpropanoid pathway | 265 | 13 | POD (108) | View species results |
| Flavonoid pathway | 211 | 13 | UFGT (141) | View species results |
| Rosmarinic acid pathway | 97 | 7 | 4CL (23) | View species results |
| Steroid pathway | 64 | 11 | SMT1/SMT2/SMT3 (24) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 952 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 262 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| RdisGWHAAKD000059520003790.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| RdisGWHAAKD000069260004490.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000075250005030.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000087720006470.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000091750006900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| RdisGWHAAKD000111820009260.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000117740010890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| RdisGWHAAKD000153400026280.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000154860026680.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| RdisGWHAAKD000177640034780.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| RdisGWHAAKD000208020047910.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| RdisGWHAAKD000214540050950.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000240250062220.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| RdisGWHAAKD000279200084060.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000287700089750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| RdisGWHAAKD000290900092130.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000295260095410.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000295260095420.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000295260096310.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| RdisGWHAAKD000310930104690.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000311800107380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000336450122960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000338890125520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| RdisGWHAAKD000340120125930.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| RdisGWHAAKD000363090148150.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| RdisGWHAAKD000381970159750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000381990161040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000382140169470.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000382240179570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| RdisGWHAAKD000382260181380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| RdisGWHAAKD000382610225730.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000382620227370.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| RdisGWHAAKD000382630229030.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000382650234040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| RdisGWHAAKD000382680240500.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |