Rhizophora apiculata (rhizophora_apiculata)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 32.42% Alkaloid pathway 21.35% Phenylpropanoid pathway 17.51% Flavonoid pathway 14.54% Rosmarinic acid pathway 8.83% Steroid pathway 5.35%

Family Distribution

1382 Candidate Genes

BAHD 6.25% C4H 6.19% C3'H/CYP98A 5.45% UGT 4.6% 7DLGT 4.39% UFGT 4.19% 4CL 3.89% CYP76 3.63%

Other Families 61.41%

More Families (95)

POD 116 3.42% IFS 106 3.12% T3O 102 3.01% DWF4/CYP90B1 86 2.54% F3H 81 2.39% F3'H/CYP75B 68 2.0% NMT 66 1.95% CAS 59 1.74% STR 56 1.65% CODM/T6ODM 56 1.65% TPS 55 1.62% GES 53 1.56% CAD 52 1.53% CYP71 49 1.44% IFR 46 1.36% HCT 46 1.36% BR6OX2/CYP85A2 46 1.36% PMT 45 1.33% SMT1/SMT2/SMT3 40 1.18% CYP90D1 39 1.15% H6H 36 1.06% IO 36 1.06% TRI/TRII 31 0.91% PYKS 31 0.91% RAS 30 0.88% BBE 29 0.85% GS 28 0.83% LAC 27 0.8% G8O/G8H 26 0.77% SGD 25 0.74% CSE 24 0.71% COMT 24 0.71% FNS 23 0.68% T16H 22 0.65% CCR 21 0.62% F3'5'H/CYP75A 19 0.56% ANR 19 0.56% TAT 18 0.53% SLS 17 0.5% F5H/CYP84A 16 0.47% 16OMT 15 0.44% PAL 15 0.44% CPD/CYP90A1 15 0.44% 8HGO 13 0.38% DFR 13 0.38% 7DLH 12 0.35% COR 12 0.35% ANS/LDOX 12 0.35% MPO 11 0.32% NCS 11 0.32% CYP51G1 11 0.32% FPPS 11 0.32% CYP80B1 10 0.29% CHS 10 0.29% LAMT 8 0.24% CYP719 8 0.24% CCoAOMT 8 0.24% BR6OX1/CYP85A1 8 0.24% HPPR 7 0.21% CPR 7 0.21% CNMT 6 0.18% AACT 6 0.18% DXS 6 0.18% ROT3/CYP90C1 5 0.15% SQS/FDFT1 5 0.15% GGPPS 5 0.15% MVK 5 0.15% DET2 4 0.12% SMO1/SMO2 4 0.12% MVD 4 0.12% ADC 3 0.09% TYDC_DDC 3 0.09% TDC 3 0.09% SQE 3 0.09% HMGR 3 0.09% ISY 2 0.06% CHI 2 0.06% HYD1 2 0.06% DWF5 2 0.06% IDI 2 0.06% MDS/IspF 2 0.06% MCT/IspD 2 0.06% HDR/IspH 2 0.06% HMGS 2 0.06% HDS/IspG 2 0.06% PMK 2 0.06% DXR 2 0.06% CYP80F1 1 0.03% XMT_MXMT_DXMT 1 0.03% FLS 1 0.03% DWF7 1 0.03% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	448	19	BAHD (154)	View species results
Alkaloid pathway	295	21	7DLGT (59)	View species results
Phenylpropanoid pathway	242	11	POD (105)	View species results
Flavonoid pathway	201	9	UFGT (125)	View species results
Rosmarinic acid pathway	122	7	C4H (48)	View species results
Steroid pathway	74	12	CAS (38)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1220	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	288	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CCR

Gene	Pathway	Family	Confidence	Status	Best Target
rhizophora_apiculata_RA_00915	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhizophora_apiculata_RA_01248	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhizophora_apiculata_RA_01250	Phenylpropanoid	CCR	low	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhizophora_apiculata_RA_06742	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhizophora_apiculata_RA_10267	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhizophora_apiculata_RA_11335	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhizophora_apiculata_RA_11581	Phenylpropanoid	CCR	medium	borderline	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhizophora_apiculata_RA_12033	Phenylpropanoid	CCR	medium	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR
rhizophora_apiculata_RA_12376	Phenylpropanoid	CCR	low	borderline	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
rhizophora_apiculata_RA_14095	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
rhizophora_apiculata_RA_14171	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhizophora_apiculata_RA_14172	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhizophora_apiculata_RA_15351	Phenylpropanoid	CCR	medium	pass	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
rhizophora_apiculata_RA_15356	Phenylpropanoid	CCR	medium	borderline	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
rhizophora_apiculata_RA_17635	Phenylpropanoid	CCR	low	borderline	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhizophora_apiculata_RA_18057	Phenylpropanoid	CCR	medium	borderline	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
rhizophora_apiculata_RA_19624	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhizophora_apiculata_RA_19714	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
rhizophora_apiculata_RA_19827	Phenylpropanoid	CCR	medium	borderline	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
rhizophora_apiculata_RA_22314	Phenylpropanoid	CCR	low	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
rhizophora_apiculata_RA_22689	Phenylpropanoid	CCR	low	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR