Rhizophora apiculata (rhizophora_apiculata)
Imported from atlas release summary for Rhizophora apiculata.
1382
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1382
Candidate Genes
BAHD
6.25%
C4H
6.19%
C3'H/CYP98A
5.45%
UGT
4.6%
7DLGT
4.39%
UFGT
4.19%
4CL
3.89%
CYP76
3.63%
Other Families
61.41%
More Families (95)
POD
116
3.42%
IFS
106
3.12%
T3O
102
3.01%
DWF4/CYP90B1
86
2.54%
F3H
81
2.39%
F3'H/CYP75B
68
2.0%
NMT
66
1.95%
CAS
59
1.74%
STR
56
1.65%
CODM/T6ODM
56
1.65%
TPS
55
1.62%
GES
53
1.56%
CAD
52
1.53%
CYP71
49
1.44%
IFR
46
1.36%
HCT
46
1.36%
BR6OX2/CYP85A2
46
1.36%
PMT
45
1.33%
SMT1/SMT2/SMT3
40
1.18%
CYP90D1
39
1.15%
H6H
36
1.06%
IO
36
1.06%
TRI/TRII
31
0.91%
PYKS
31
0.91%
RAS
30
0.88%
BBE
29
0.85%
GS
28
0.83%
LAC
27
0.8%
G8O/G8H
26
0.77%
SGD
25
0.74%
CSE
24
0.71%
COMT
24
0.71%
FNS
23
0.68%
T16H
22
0.65%
CCR
21
0.62%
F3'5'H/CYP75A
19
0.56%
ANR
19
0.56%
TAT
18
0.53%
SLS
17
0.5%
F5H/CYP84A
16
0.47%
16OMT
15
0.44%
PAL
15
0.44%
CPD/CYP90A1
15
0.44%
8HGO
13
0.38%
DFR
13
0.38%
7DLH
12
0.35%
COR
12
0.35%
ANS/LDOX
12
0.35%
MPO
11
0.32%
NCS
11
0.32%
CYP51G1
11
0.32%
FPPS
11
0.32%
CYP80B1
10
0.29%
CHS
10
0.29%
LAMT
8
0.24%
CYP719
8
0.24%
CCoAOMT
8
0.24%
BR6OX1/CYP85A1
8
0.24%
HPPR
7
0.21%
CPR
7
0.21%
CNMT
6
0.18%
AACT
6
0.18%
DXS
6
0.18%
ROT3/CYP90C1
5
0.15%
SQS/FDFT1
5
0.15%
GGPPS
5
0.15%
MVK
5
0.15%
DET2
4
0.12%
SMO1/SMO2
4
0.12%
MVD
4
0.12%
ADC
3
0.09%
TYDC_DDC
3
0.09%
TDC
3
0.09%
SQE
3
0.09%
HMGR
3
0.09%
ISY
2
0.06%
CHI
2
0.06%
HYD1
2
0.06%
DWF5
2
0.06%
IDI
2
0.06%
MDS/IspF
2
0.06%
MCT/IspD
2
0.06%
HDR/IspH
2
0.06%
HMGS
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 448 | 19 | BAHD (154) | View species results |
| Alkaloid pathway | 295 | 21 | 7DLGT (59) | View species results |
| Phenylpropanoid pathway | 242 | 11 | POD (105) | View species results |
| Flavonoid pathway | 201 | 9 | UFGT (125) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (48) | View species results |
| Steroid pathway | 74 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1220 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 288 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| rhizophora_apiculata_RA_00973 | Alkaloid | H6H | medium | pass |
| rhizophora_apiculata_RA_01152 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_01441 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_02226 | Alkaloid | H6H | medium | pass |
| rhizophora_apiculata_RA_04303 | Alkaloid | H6H | medium | pass |
| rhizophora_apiculata_RA_04345 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_04601 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_06000 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_06227 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_06228 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_07872 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_08310 | Alkaloid | H6H | high | pass |
| rhizophora_apiculata_RA_08678 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_09060 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_10367 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_10427 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_10489 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_10786 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_10897 | Alkaloid | H6H | high | pass |
| rhizophora_apiculata_RA_12943 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_15913 | Alkaloid | H6H | high | pass |
| rhizophora_apiculata_RA_17011 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_17912 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_19782 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_20172 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_21490 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_21882 | Alkaloid | H6H | high | pass |
| rhizophora_apiculata_RA_22501 | Alkaloid | H6H | medium | borderline |
| rhizophora_apiculata_RA_22783 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_23326 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_23642 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_23785 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_23786 | Alkaloid | H6H | medium | pass |
| rhizophora_apiculata_RA_23787 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_24229 | Alkaloid | H6H | low | borderline |
| rhizophora_apiculata_RA_24230 | Alkaloid | H6H | low | borderline |