Rhizophora apiculata (rhizophora_apiculata)
Imported from atlas release summary for Rhizophora apiculata.
1382
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1382
Candidate Genes
BAHD
6.25%
C4H
6.19%
C3'H/CYP98A
5.45%
UGT
4.6%
7DLGT
4.39%
UFGT
4.19%
4CL
3.89%
CYP76
3.63%
Other Families
61.41%
More Families (95)
POD
116
3.42%
IFS
106
3.12%
T3O
102
3.01%
DWF4/CYP90B1
86
2.54%
F3H
81
2.39%
F3'H/CYP75B
68
2.0%
NMT
66
1.95%
CAS
59
1.74%
STR
56
1.65%
CODM/T6ODM
56
1.65%
TPS
55
1.62%
GES
53
1.56%
CAD
52
1.53%
CYP71
49
1.44%
IFR
46
1.36%
HCT
46
1.36%
BR6OX2/CYP85A2
46
1.36%
PMT
45
1.33%
SMT1/SMT2/SMT3
40
1.18%
CYP90D1
39
1.15%
H6H
36
1.06%
IO
36
1.06%
TRI/TRII
31
0.91%
PYKS
31
0.91%
RAS
30
0.88%
BBE
29
0.85%
GS
28
0.83%
LAC
27
0.8%
G8O/G8H
26
0.77%
SGD
25
0.74%
CSE
24
0.71%
COMT
24
0.71%
FNS
23
0.68%
T16H
22
0.65%
CCR
21
0.62%
F3'5'H/CYP75A
19
0.56%
ANR
19
0.56%
TAT
18
0.53%
SLS
17
0.5%
F5H/CYP84A
16
0.47%
16OMT
15
0.44%
PAL
15
0.44%
CPD/CYP90A1
15
0.44%
8HGO
13
0.38%
DFR
13
0.38%
7DLH
12
0.35%
COR
12
0.35%
ANS/LDOX
12
0.35%
MPO
11
0.32%
NCS
11
0.32%
CYP51G1
11
0.32%
FPPS
11
0.32%
CYP80B1
10
0.29%
CHS
10
0.29%
LAMT
8
0.24%
CYP719
8
0.24%
CCoAOMT
8
0.24%
BR6OX1/CYP85A1
8
0.24%
HPPR
7
0.21%
CPR
7
0.21%
CNMT
6
0.18%
AACT
6
0.18%
DXS
6
0.18%
ROT3/CYP90C1
5
0.15%
SQS/FDFT1
5
0.15%
GGPPS
5
0.15%
MVK
5
0.15%
DET2
4
0.12%
SMO1/SMO2
4
0.12%
MVD
4
0.12%
ADC
3
0.09%
TYDC_DDC
3
0.09%
TDC
3
0.09%
SQE
3
0.09%
HMGR
3
0.09%
ISY
2
0.06%
CHI
2
0.06%
HYD1
2
0.06%
DWF5
2
0.06%
IDI
2
0.06%
MDS/IspF
2
0.06%
MCT/IspD
2
0.06%
HDR/IspH
2
0.06%
HMGS
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 448 | 19 | BAHD (154) | View species results |
| Alkaloid pathway | 295 | 21 | 7DLGT (59) | View species results |
| Phenylpropanoid pathway | 242 | 11 | POD (105) | View species results |
| Flavonoid pathway | 201 | 9 | UFGT (125) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (48) | View species results |
| Steroid pathway | 74 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1220 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 288 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rhizophora_apiculata_RA_18423 | Terpenoid | BAHD | medium | pass | BAHD__00014__sp_B9RK42_GPC1_RICCO |
| rhizophora_apiculata_RA_18433 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| rhizophora_apiculata_RA_18456 | Terpenoid | BAHD | low | borderline | BAHD__00092__sp_Q9SU91_LPXA_ARATH |
| rhizophora_apiculata_RA_18520 | Terpenoid | BAHD | low | borderline | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| rhizophora_apiculata_RA_18996 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| rhizophora_apiculata_RA_18997 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| rhizophora_apiculata_RA_19156 | Terpenoid | BAHD | medium | pass | BAHD__00038__sp_Q3EC11_ZDHC2_ARATH |
| rhizophora_apiculata_RA_19176 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| rhizophora_apiculata_RA_19243 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| rhizophora_apiculata_RA_19462 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| rhizophora_apiculata_RA_19522 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| rhizophora_apiculata_RA_19528 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| rhizophora_apiculata_RA_19532 | Terpenoid | BAHD | medium | pass | BAHD__00030__sp_O80816_GLC_ARATH |
| rhizophora_apiculata_RA_19694 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| rhizophora_apiculata_RA_19695 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| rhizophora_apiculata_RA_19769 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| rhizophora_apiculata_RA_19770 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| rhizophora_apiculata_RA_19926 | Terpenoid | BAHD | low | borderline | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| rhizophora_apiculata_RA_20107 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| rhizophora_apiculata_RA_20117 | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| rhizophora_apiculata_RA_20163 | Terpenoid | BAHD | medium | pass | BAHD__00083__sp_Q9LMM0_GPAT4_ARATH |
| rhizophora_apiculata_RA_20485 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| rhizophora_apiculata_RA_20784 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| rhizophora_apiculata_RA_20857 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| rhizophora_apiculata_RA_21317 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| rhizophora_apiculata_RA_21625 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| rhizophora_apiculata_RA_21734 | Terpenoid | BAHD | low | borderline | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| rhizophora_apiculata_RA_21735 | Terpenoid | BAHD | medium | pass | BAHD__00001__sp_A0A068BGA5_AT1_ACTDE |
| rhizophora_apiculata_RA_21736 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| rhizophora_apiculata_RA_21738 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| rhizophora_apiculata_RA_22043 | Terpenoid | BAHD | medium | pass | BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH |
| rhizophora_apiculata_RA_22190 | Terpenoid | BAHD | low | borderline | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| rhizophora_apiculata_RA_22224 | Terpenoid | BAHD | low | borderline | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| rhizophora_apiculata_RA_22520 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| rhizophora_apiculata_RA_22560 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| rhizophora_apiculata_RA_22648 | Terpenoid | BAHD | medium | pass | BAHD__00071__sp_Q9CAY3_GPAT5_ARATH |
| rhizophora_apiculata_RA_22752 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| rhizophora_apiculata_RA_22792 | Terpenoid | BAHD | medium | pass | BAHD__00031__sp_P0DO25_AT9_ACTDE |
| rhizophora_apiculata_RA_22834 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| rhizophora_apiculata_RA_22837 | Terpenoid | BAHD | low | borderline | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| rhizophora_apiculata_RA_22840 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| rhizophora_apiculata_RA_22841 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| rhizophora_apiculata_RA_22845 | Terpenoid | BAHD | medium | pass | BAHD__00053__sp_Q8GXU8_LPAT1_ARATH |
| rhizophora_apiculata_RA_22929 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| rhizophora_apiculata_RA_23039 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| rhizophora_apiculata_RA_23254 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| rhizophora_apiculata_RA_23557 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| rhizophora_apiculata_RA_23564 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| rhizophora_apiculata_RA_23579 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| rhizophora_apiculata_RA_23746 | Terpenoid | BAHD | medium | pass | BAHD__00034__sp_P10349_GPAT2_CUCMO |