Rhizophora apiculata (rhizophora_apiculata)
Imported from atlas release summary for Rhizophora apiculata.
1607
Candidate Protein Records
1382
Pathway-Level Records
3392
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3392
Family-Level Calls
BAHD
6.25%
C4H
6.19%
C3'H/CYP98A
5.45%
UGT
4.6%
7DLGT
4.39%
UFGT
4.19%
4CL
3.89%
CYP76
3.63%
Other Families
61.41%
More Families (95)
POD
116
3.42%
IFS
106
3.12%
T3O
102
3.01%
DWF4/CYP90B1
86
2.54%
F3H
81
2.39%
F3'H/CYP75B
68
2.0%
NMT
66
1.95%
CAS
59
1.74%
STR
56
1.65%
CODM/T6ODM
56
1.65%
TPS
55
1.62%
GES
53
1.56%
CAD
52
1.53%
CYP71
49
1.44%
IFR
46
1.36%
HCT
46
1.36%
BR6OX2/CYP85A2
46
1.36%
PMT
45
1.33%
SMT1/SMT2/SMT3
40
1.18%
CYP90D1
39
1.15%
H6H
36
1.06%
IO
36
1.06%
TRI/TRII
31
0.91%
PYKS
31
0.91%
RAS
30
0.88%
BBE
29
0.85%
GS
28
0.83%
LAC
27
0.8%
G8O/G8H
26
0.77%
SGD
25
0.74%
CSE
24
0.71%
COMT
24
0.71%
FNS
23
0.68%
T16H
22
0.65%
CCR
21
0.62%
F3'5'H/CYP75A
19
0.56%
ANR
19
0.56%
TAT
18
0.53%
SLS
17
0.5%
F5H/CYP84A
16
0.47%
16OMT
15
0.44%
PAL
15
0.44%
CPD/CYP90A1
15
0.44%
8HGO
13
0.38%
DFR
13
0.38%
7DLH
12
0.35%
COR
12
0.35%
ANS/LDOX
12
0.35%
MPO
11
0.32%
NCS
11
0.32%
CYP51G1
11
0.32%
FPPS
11
0.32%
CYP80B1
10
0.29%
CHS
10
0.29%
LAMT
8
0.24%
CYP719
8
0.24%
CCoAOMT
8
0.24%
BR6OX1/CYP85A1
8
0.24%
HPPR
7
0.21%
CPR
7
0.21%
CNMT
6
0.18%
AACT
6
0.18%
DXS
6
0.18%
ROT3/CYP90C1
5
0.15%
SQS/FDFT1
5
0.15%
GGPPS
5
0.15%
MVK
5
0.15%
DET2
4
0.12%
SMO1/SMO2
4
0.12%
MVD
4
0.12%
ADC
3
0.09%
TYDC_DDC
3
0.09%
TDC
3
0.09%
SQE
3
0.09%
HMGR
3
0.09%
ISY
2
0.06%
CHI
2
0.06%
HYD1
2
0.06%
DWF5
2
0.06%
IDI
2
0.06%
MDS/IspF
2
0.06%
MCT/IspD
2
0.06%
HDR/IspH
2
0.06%
HMGS
2
0.06%
HDS/IspG
2
0.06%
PMK
2
0.06%
DXR
2
0.06%
CYP80F1
1
0.03%
XMT_MXMT_DXMT
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 448 | 19 | BAHD (154) | View species results |
| Alkaloid pathway | 295 | 21 | 7DLGT (59) | View species results |
| Phenylpropanoid pathway | 242 | 11 | POD (105) | View species results |
| Flavonoid pathway | 201 | 9 | UFGT (125) | View species results |
| Rosmarinic acid pathway | 122 | 7 | C4H (48) | View species results |
| Steroid pathway | 74 | 12 | CAS (38) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1220 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 288 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| rhizophora_apiculata_RA_05835 | Terpenoid | GGPPS | medium | borderline |
| rhizophora_apiculata_RA_06253 | Terpenoid | GGPPS | medium | borderline |
| rhizophora_apiculata_RA_08597 | Terpenoid | GGPPS | medium | borderline |
| rhizophora_apiculata_RA_14312 | Terpenoid | GGPPS | medium | borderline |
| rhizophora_apiculata_RA_22215 | Terpenoid | GGPPS | medium | borderline |
| rhizophora_apiculata_RA_06671 | Terpenoid | HDR/IspH | high | pass |
| rhizophora_apiculata_RA_24127 | Terpenoid | HDR/IspH | high | pass |
| rhizophora_apiculata_RA_09413 | Terpenoid | HDS/IspG | high | pass |
| rhizophora_apiculata_RA_16292 | Terpenoid | HDS/IspG | high | pass |
| rhizophora_apiculata_RA_06466 | Terpenoid | HMGR | low | borderline |
| rhizophora_apiculata_RA_14277 | Terpenoid | HMGR | medium | pass |
| rhizophora_apiculata_RA_18058 | Terpenoid | HMGR | medium | pass |
| rhizophora_apiculata_RA_07964 | Terpenoid | HMGS | high | pass |
| rhizophora_apiculata_RA_13003 | Terpenoid | HMGS | high | pass |
| rhizophora_apiculata_RA_00739 | Terpenoid | IDI | medium | pass |
| rhizophora_apiculata_RA_19518 | Terpenoid | IDI | medium | pass |
| rhizophora_apiculata_RA_06068 | Terpenoid | MCT/IspD | low | borderline |
| rhizophora_apiculata_RA_15772 | Terpenoid | MCT/IspD | high | pass |
| rhizophora_apiculata_RA_01290 | Terpenoid | MDS/IspF | high | pass |
| rhizophora_apiculata_RA_22275 | Terpenoid | MDS/IspF | medium | pass |
| rhizophora_apiculata_RA_05501 | Terpenoid | MVD | low | borderline |
| rhizophora_apiculata_RA_05931 | Terpenoid | MVD | low | borderline |
| rhizophora_apiculata_RA_05934 | Terpenoid | MVD | medium | pass |
| rhizophora_apiculata_RA_24288 | Terpenoid | MVD | medium | pass |
| rhizophora_apiculata_RA_06477 | Terpenoid | MVK | low | borderline |
| rhizophora_apiculata_RA_12596 | Terpenoid | MVK | low | borderline |
| rhizophora_apiculata_RA_14284 | Terpenoid | MVK | low | borderline |
| rhizophora_apiculata_RA_16636 | Terpenoid | MVK | medium | pass |
| rhizophora_apiculata_RA_21354 | Terpenoid | MVK | low | borderline |
| rhizophora_apiculata_RA_11295 | Terpenoid | PMK | low | borderline |
| rhizophora_apiculata_RA_19794 | Terpenoid | PMK | medium | pass |
| rhizophora_apiculata_RA_00381 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_00416 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_00520 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_00592 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_00688 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_01633 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_04014 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_04366 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_05699 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_05715 | Terpenoid | TPS | low | borderline |
| rhizophora_apiculata_RA_06456 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_08521 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_08523 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_09521 | Terpenoid | TPS | low | borderline |
| rhizophora_apiculata_RA_09523 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_09524 | Terpenoid | TPS | low | borderline |
| rhizophora_apiculata_RA_09525 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_09530 | Terpenoid | TPS | medium | pass |
| rhizophora_apiculata_RA_09531 | Terpenoid | TPS | medium | pass |