PlantSME Plant secondary metabolism enzyme database

Rhododendron ovatum (rhododendron_ovatum)

Imported from atlas release summary for Rhododendron ovatum.

2622
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.43% Alkaloid pathway 20.94% Phenylpropanoid pathway 17.01% Flavonoid pathway 15.14% Rosmarinic acid pathway 8.73% Steroid pathway 7.74%
Family Distribution
C4H 6.44% C3'H/CYP98A 5.78% UGT 5.51% 7DLGT 5.08% UFGT 5.05% BAHD 4.84% IFS 3.91% CYP76 3.8%
Other Families 59.59%
More Families (98)
4CL 204 3.32% T3O 192 3.13% POD 184 3.0% F3H 174 2.84% CAS 146 2.38% CAD 132 2.15% DWF4/CYP90B1 132 2.15% F3'H/CYP75B 123 2.0% TPS 119 1.94% CODM/T6ODM 114 1.86% GES 111 1.81% BR6OX2/CYP85A2 109 1.78% STR 101 1.65% NMT 86 1.4% H6H 76 1.24% IO 65 1.06% SMT1/SMT2/SMT3 64 1.04% HCT 61 0.99% CYP71 61 0.99% IFR 56 0.91% LAC 54 0.88% CYP90D1 54 0.88% CSE 53 0.86% GS 52 0.85% T16H 49 0.8% TAT 49 0.8% RAS 46 0.75% BR6OX1/CYP85A1 45 0.73% SGD 43 0.7% COMT 41 0.67% PYKS 40 0.65% 7DLH 39 0.64% 16OMT 37 0.6% TRI/TRII 36 0.59% SLS 36 0.59% BBE 32 0.52% ANR 32 0.52% G8O/G8H 30 0.49% F5H/CYP84A 29 0.47% F3'5'H/CYP75A 28 0.46% CCR 28 0.46% CPD/CYP90A1 28 0.46% LAMT 27 0.44% FNS 24 0.39% PMT 23 0.37% 8HGO 23 0.37% ROT3/CYP90C1 21 0.34% CHS 18 0.29% CYP51G1 18 0.29% COR 17 0.28% DFR 17 0.28% HPPR 15 0.24% CYP80B1 14 0.23% ANS/LDOX 13 0.21% NCS 12 0.2% PAL 12 0.2% AACT 12 0.2% CNMT 11 0.18% CYP719 10 0.16% CPR 10 0.16% MPO 9 0.15% CCoAOMT 9 0.15% ADC 8 0.13% TYDC_DDC 8 0.13% CHI 8 0.13% MVD 8 0.13% DXS 8 0.13% GGPPS 8 0.13% DET2 7 0.11% SQS/FDFT1 7 0.11% HMGR 6 0.1% FPPS 6 0.1% MVK 6 0.1% ISY 5 0.08% SQE 5 0.08% HDR/IspH 5 0.08% PMK 5 0.08% CPI1 4 0.07% DWF7 4 0.07% FK 4 0.07% SMO1/SMO2 4 0.07% HYD1 4 0.07% HMGS 4 0.07% ODC 3 0.05% DWF1 3 0.05% CYP80F1 2 0.03% TDC 2 0.03% FLS 2 0.03% DWF5 2 0.03% DXR 2 0.03% HDS/IspG 2 0.03% CMK/IspE 2 0.03% MCT/IspD 2 0.03% 6OMT_4OMT_SOMT 1 0.02% XMT_MXMT_DXMT 1 0.02% GPPS 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 798 19 UGT (315) View species results
Alkaloid pathway 549 25 7DLGT (142) View species results
Phenylpropanoid pathway 446 12 POD (170) View species results
Flavonoid pathway 397 13 UFGT (287) View species results
Rosmarinic acid pathway 229 7 C4H (103) View species results
Steroid pathway 203 12 CAS (128) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2308 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 404 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
Reset
Gene Pathway Family Confidence Status Best Target
Rova02G0013240 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Rova02G0016340 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Rova02G0016350 Flavonoid CHI medium pass CHI__00004__sp_P11650_CFI1_PETHY
Rova02G0021440 Flavonoid CHI low borderline CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Rova02G0021660 Flavonoid CHI low borderline CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Rova03G0040230 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Rova03G0040930 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Rova11G0027810 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU