PlantSME Plant secondary metabolism enzyme database

Rhododendron vialii (rhododendron_vialii)

Imported from atlas release summary for Rhododendron vialii.

4644
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.72% Alkaloid pathway 21.19% Phenylpropanoid pathway 16.21% Flavonoid pathway 15.33% Rosmarinic acid pathway 8.46% Steroid pathway 7.08%
Family Distribution
UGT 6.01% C4H 5.89% BAHD 5.66% C3'H/CYP98A 5.56% 7DLGT 5.54% UFGT 5.35% IFS 3.98% 4CL 3.8%
Other Families 58.21%
More Families (96)
CYP76 356 3.42% T3O 303 2.91% POD 303 2.91% F3H 268 2.57% DWF4/CYP90B1 238 2.28% CAS 207 1.99% NMT 205 1.97% CAD 187 1.79% BR6OX2/CYP85A2 180 1.73% STR 177 1.7% F3'H/CYP75B 174 1.67% CODM/T6ODM 173 1.66% TPS 149 1.43% GES 136 1.31% H6H 116 1.11% CYP71 114 1.09% SMT1/SMT2/SMT3 112 1.08% IFR 109 1.05% GS 106 1.02% HCT 102 0.98% IO 99 0.95% LAC 99 0.95% CYP90D1 94 0.9% TRI/TRII 91 0.87% RAS 90 0.86% SGD 85 0.82% ANR 84 0.81% T16H 80 0.77% TAT 79 0.76% CSE 78 0.75% 7DLH 70 0.67% BBE 67 0.64% PYKS 66 0.63% SLS 65 0.62% BR6OX1/CYP85A1 64 0.61% COMT 61 0.59% CCR 55 0.53% G8O/G8H 51 0.49% 8HGO 51 0.49% F3'5'H/CYP75A 46 0.44% FNS 44 0.42% PMT 42 0.4% CPD/CYP90A1 41 0.39% 16OMT 36 0.35% F5H/CYP84A 36 0.35% COR 34 0.33% CYP51G1 33 0.32% CNMT 29 0.28% CHS 28 0.27% ROT3/CYP90C1 28 0.27% LAMT 27 0.26% AACT 27 0.26% DFR 24 0.23% PAL 24 0.23% GGPPS 22 0.21% ANS/LDOX 21 0.2% CCoAOMT 20 0.19% NCS 19 0.18% MPO 17 0.16% CHI 17 0.16% HPPR 17 0.16% SQS/FDFT1 17 0.16% MVD 17 0.16% CYP80B1 16 0.15% DET2 16 0.15% CYP719 15 0.14% TYDC_DDC 13 0.12% CPR 13 0.12% PMK 13 0.12% FPPS 13 0.12% HMGR 12 0.12% DXS 11 0.11% ISY 10 0.1% SQE 10 0.1% SMO1/SMO2 9 0.09% ODC 8 0.08% MVK 8 0.08% DWF7 7 0.07% HDS/IspG 7 0.07% ADC 6 0.06% FK 6 0.06% DWF1 6 0.06% HDR/IspH 6 0.06% HMGS 6 0.06% DXR 6 0.06% TDC 5 0.05% MDS/IspF 5 0.05% FLS 4 0.04% HYD1 4 0.04% DWF5 4 0.04% MCT/IspD 4 0.04% CMK/IspE 3 0.03% XMT_MXMT_DXMT 2 0.02% CPI1 2 0.02% GPPS 2 0.02% IDI 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1473 20 UGT (602) View species results
Alkaloid pathway 984 26 7DLGT (261) View species results
Phenylpropanoid pathway 753 11 POD (297) View species results
Flavonoid pathway 712 13 UFGT (519) View species results
Rosmarinic acid pathway 393 7 C4H (175) View species results
Steroid pathway 329 13 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 3711 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 782 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
Reset
Gene Pathway Family Confidence Status Best Target
rhododendron_vialii_GWHPCAXW002874 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
rhododendron_vialii_GWHPCAXW002875 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
rhododendron_vialii_GWHPCAXW002876 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
rhododendron_vialii_GWHPCAXW006185 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
rhododendron_vialii_GWHPCAXW006186 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
rhododendron_vialii_GWHPCAXW023288 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW067414 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW067415 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW070404 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW074751 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW074752 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW074753 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
rhododendron_vialii_GWHPCAXW078063 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO