PlantSME Plant secondary metabolism enzyme database

Rhynchospora tenuis (rhynchospora_tenuis)

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Imported from atlas release summary for Rhynchospora tenuis.

1717
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.32% Terpenoid pathway 25.04% Alkaloid pathway 20.15% Flavonoid pathway 15.73% Rosmarinic acid pathway 7.51% Steroid pathway 4.25%
Family Distribution
C3'H/CYP98A 6.31% C4H 5.67% BAHD 5.59% UGT 5.43% 7DLGT 5.09% UFGT 5.04% POD 4.29% CSE 3.98%
Other Families 58.6%
More Families (94)
T3O 146 3.87% IFS 136 3.6% 4CL 117 3.1% CYP76 112 2.97% DWF4/CYP90B1 94 2.49% F3'H/CYP75B 85 2.25% BR6OX2/CYP85A2 79 2.09% F3H 74 1.96% CYP71 72 1.91% NMT 66 1.75% TRI/TRII 58 1.54% STR 57 1.51% PYKS 54 1.43% HCT 51 1.35% SMT1/SMT2/SMT3 48 1.27% CAD 46 1.22% RAS 44 1.17% PMT 43 1.14% COMT 37 0.98% CODM/T6ODM 36 0.95% SLS 36 0.95% LAC 36 0.95% H6H 35 0.93% CHS 35 0.93% 16OMT 33 0.87% SGD 32 0.85% IFR 31 0.82% CAS 28 0.74% CYP90D1 28 0.74% GS 26 0.69% T16H 24 0.64% ANR 23 0.61% CYP51G1 21 0.56% TPS 20 0.53% GES 19 0.5% FNS 18 0.48% IO 16 0.42% TAT 14 0.37% NCS 13 0.34% 8HGO 13 0.34% CPD/CYP90A1 13 0.34% G8O/G8H 12 0.32% F3'5'H/CYP75A 12 0.32% PAL 12 0.32% COR 11 0.29% CCR 11 0.29% HPPR 11 0.29% CNMT 9 0.24% CYP719 9 0.24% 7DLH 9 0.24% BR6OX1/CYP85A1 9 0.24% BBE 7 0.19% DFR 7 0.19% FPPS 7 0.19% MPO 6 0.16% ANS/LDOX 6 0.16% CCoAOMT 6 0.16% CPR 6 0.16% DET2 6 0.16% CYP80B1 5 0.13% LAMT 5 0.13% F5H/CYP84A 5 0.13% SQS/FDFT1 5 0.13% AACT 5 0.13% TDC 4 0.11% CHI 4 0.11% HMGR 4 0.11% DXS 4 0.11% TYDC_DDC 3 0.08% SMO1/SMO2 3 0.08% ROT3/CYP90C1 3 0.08% SQE 3 0.08% GGPPS 3 0.08% MVD 3 0.08% MVK 3 0.08% ISY 2 0.05% XMT_MXMT_DXMT 2 0.05% CMK/IspE 2 0.05% MCT/IspD 2 0.05% PMK 2 0.05% ADC 1 0.03% FLS 1 0.03% HYD1 1 0.03% DWF1 1 0.03% DWF5 1 0.03% FK 1 0.03% DWF7 1 0.03% CPI1 1 0.03% HDR/IspH 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% DXR 1 0.03% IDI 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 469 11 POD (160) View species results
Terpenoid pathway 430 19 UGT (190) View species results
Alkaloid pathway 346 17 7DLGT (87) View species results
Flavonoid pathway 270 9 UFGT (184) View species results
Rosmarinic acid pathway 129 7 C4H (52) View species results
Steroid pathway 73 13 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1378 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 306 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
rhynchospora_tenuis_mRNA20571 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_tenuis_mRNA21037 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
rhynchospora_tenuis_mRNA2145 Rosmarinic Acid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_tenuis_mRNA219 Rosmarinic Acid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
rhynchospora_tenuis_mRNA34 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
rhynchospora_tenuis_mRNA3481 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_tenuis_mRNA3482 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
rhynchospora_tenuis_mRNA4780 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_tenuis_mRNA4841 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
rhynchospora_tenuis_mRNA4996 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
rhynchospora_tenuis_mRNA5385 Rosmarinic Acid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
rhynchospora_tenuis_mRNA7363 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
rhynchospora_tenuis_mRNA7382 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_tenuis_mRNA7383 Rosmarinic Acid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
rhynchospora_tenuis_mRNA7837 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
rhynchospora_tenuis_mRNA8341 Rosmarinic Acid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
rhynchospora_tenuis_mRNA894 Rosmarinic Acid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH