PlantSME Plant secondary metabolism enzyme database

Rhynchospora tenuis (rhynchospora_tenuis)

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Imported from atlas release summary for Rhynchospora tenuis.

1717
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.32% Terpenoid pathway 25.04% Alkaloid pathway 20.15% Flavonoid pathway 15.73% Rosmarinic acid pathway 7.51% Steroid pathway 4.25%
Family Distribution
C3'H/CYP98A 6.31% C4H 5.67% BAHD 5.59% UGT 5.43% 7DLGT 5.09% UFGT 5.04% POD 4.29% CSE 3.98%
Other Families 58.6%
More Families (94)
T3O 146 3.87% IFS 136 3.6% 4CL 117 3.1% CYP76 112 2.97% DWF4/CYP90B1 94 2.49% F3'H/CYP75B 85 2.25% BR6OX2/CYP85A2 79 2.09% F3H 74 1.96% CYP71 72 1.91% NMT 66 1.75% TRI/TRII 58 1.54% STR 57 1.51% PYKS 54 1.43% HCT 51 1.35% SMT1/SMT2/SMT3 48 1.27% CAD 46 1.22% RAS 44 1.17% PMT 43 1.14% COMT 37 0.98% CODM/T6ODM 36 0.95% SLS 36 0.95% LAC 36 0.95% H6H 35 0.93% CHS 35 0.93% 16OMT 33 0.87% SGD 32 0.85% IFR 31 0.82% CAS 28 0.74% CYP90D1 28 0.74% GS 26 0.69% T16H 24 0.64% ANR 23 0.61% CYP51G1 21 0.56% TPS 20 0.53% GES 19 0.5% FNS 18 0.48% IO 16 0.42% TAT 14 0.37% NCS 13 0.34% 8HGO 13 0.34% CPD/CYP90A1 13 0.34% G8O/G8H 12 0.32% F3'5'H/CYP75A 12 0.32% PAL 12 0.32% COR 11 0.29% CCR 11 0.29% HPPR 11 0.29% CNMT 9 0.24% CYP719 9 0.24% 7DLH 9 0.24% BR6OX1/CYP85A1 9 0.24% BBE 7 0.19% DFR 7 0.19% FPPS 7 0.19% MPO 6 0.16% ANS/LDOX 6 0.16% CCoAOMT 6 0.16% CPR 6 0.16% DET2 6 0.16% CYP80B1 5 0.13% LAMT 5 0.13% F5H/CYP84A 5 0.13% SQS/FDFT1 5 0.13% AACT 5 0.13% TDC 4 0.11% CHI 4 0.11% HMGR 4 0.11% DXS 4 0.11% TYDC_DDC 3 0.08% SMO1/SMO2 3 0.08% ROT3/CYP90C1 3 0.08% SQE 3 0.08% GGPPS 3 0.08% MVD 3 0.08% MVK 3 0.08% ISY 2 0.05% XMT_MXMT_DXMT 2 0.05% CMK/IspE 2 0.05% MCT/IspD 2 0.05% PMK 2 0.05% ADC 1 0.03% FLS 1 0.03% HYD1 1 0.03% DWF1 1 0.03% DWF5 1 0.03% FK 1 0.03% DWF7 1 0.03% CPI1 1 0.03% HDR/IspH 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% DXR 1 0.03% IDI 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 469 11 POD (160) View species results
Terpenoid pathway 430 19 UGT (190) View species results
Alkaloid pathway 346 17 7DLGT (87) View species results
Flavonoid pathway 270 9 UFGT (184) View species results
Rosmarinic acid pathway 129 7 C4H (52) View species results
Steroid pathway 73 13 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1378 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 306 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
rhynchospora_tenuis_mRNA1137 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
rhynchospora_tenuis_mRNA12484 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
rhynchospora_tenuis_mRNA14900 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
rhynchospora_tenuis_mRNA16333 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
rhynchospora_tenuis_mRNA6853 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
rhynchospora_tenuis_mRNA7046 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
rhynchospora_tenuis_mRNA7047 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
rhynchospora_tenuis_mRNA7048 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
rhynchospora_tenuis_mRNA7049 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
rhynchospora_tenuis_mRNA8103 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
rhynchospora_tenuis_mRNA9618 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO