Rhynchospora tenuis (rhynchospora_tenuis)
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Imported from atlas release summary for Rhynchospora tenuis.
1717
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1717
Candidate Genes
C3'H/CYP98A
6.31%
C4H
5.67%
BAHD
5.59%
UGT
5.43%
7DLGT
5.09%
UFGT
5.04%
POD
4.29%
CSE
3.98%
Other Families
58.6%
More Families (94)
T3O
146
3.87%
IFS
136
3.6%
4CL
117
3.1%
CYP76
112
2.97%
DWF4/CYP90B1
94
2.49%
F3'H/CYP75B
85
2.25%
BR6OX2/CYP85A2
79
2.09%
F3H
74
1.96%
CYP71
72
1.91%
NMT
66
1.75%
TRI/TRII
58
1.54%
STR
57
1.51%
PYKS
54
1.43%
HCT
51
1.35%
SMT1/SMT2/SMT3
48
1.27%
CAD
46
1.22%
RAS
44
1.17%
PMT
43
1.14%
COMT
37
0.98%
CODM/T6ODM
36
0.95%
SLS
36
0.95%
LAC
36
0.95%
H6H
35
0.93%
CHS
35
0.93%
16OMT
33
0.87%
SGD
32
0.85%
IFR
31
0.82%
CAS
28
0.74%
CYP90D1
28
0.74%
GS
26
0.69%
T16H
24
0.64%
ANR
23
0.61%
CYP51G1
21
0.56%
TPS
20
0.53%
GES
19
0.5%
FNS
18
0.48%
IO
16
0.42%
TAT
14
0.37%
NCS
13
0.34%
8HGO
13
0.34%
CPD/CYP90A1
13
0.34%
G8O/G8H
12
0.32%
F3'5'H/CYP75A
12
0.32%
PAL
12
0.32%
COR
11
0.29%
CCR
11
0.29%
HPPR
11
0.29%
CNMT
9
0.24%
CYP719
9
0.24%
7DLH
9
0.24%
BR6OX1/CYP85A1
9
0.24%
BBE
7
0.19%
DFR
7
0.19%
FPPS
7
0.19%
MPO
6
0.16%
ANS/LDOX
6
0.16%
CCoAOMT
6
0.16%
CPR
6
0.16%
DET2
6
0.16%
CYP80B1
5
0.13%
LAMT
5
0.13%
F5H/CYP84A
5
0.13%
SQS/FDFT1
5
0.13%
AACT
5
0.13%
TDC
4
0.11%
CHI
4
0.11%
HMGR
4
0.11%
DXS
4
0.11%
TYDC_DDC
3
0.08%
SMO1/SMO2
3
0.08%
ROT3/CYP90C1
3
0.08%
SQE
3
0.08%
GGPPS
3
0.08%
MVD
3
0.08%
MVK
3
0.08%
ISY
2
0.05%
XMT_MXMT_DXMT
2
0.05%
CMK/IspE
2
0.05%
MCT/IspD
2
0.05%
PMK
2
0.05%
ADC
1
0.03%
FLS
1
0.03%
HYD1
1
0.03%
DWF1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
CPI1
1
0.03%
HDR/IspH
1
0.03%
MDS/IspF
1
0.03%
HMGS
1
0.03%
DXR
1
0.03%
IDI
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 469 | 11 | POD (160) | View species results |
| Terpenoid pathway | 430 | 19 | UGT (190) | View species results |
| Alkaloid pathway | 346 | 17 | 7DLGT (87) | View species results |
| Flavonoid pathway | 270 | 9 | UFGT (184) | View species results |
| Rosmarinic acid pathway | 129 | 7 | C4H (52) | View species results |
| Steroid pathway | 73 | 13 | SMT1/SMT2/SMT3 (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1378 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 306 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| rhynchospora_tenuis_mRNA1189 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1190 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1191 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1192 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1193 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1194 | Alkaloid | GES | medium | pass | GES__00002__sp_C0KWV4_GRNLG_PERFH |
| rhynchospora_tenuis_mRNA1195 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1197 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA1198 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA13543 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| rhynchospora_tenuis_mRNA14905 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| rhynchospora_tenuis_mRNA14907 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| rhynchospora_tenuis_mRNA14910 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| rhynchospora_tenuis_mRNA16060 | Alkaloid | GES | low | borderline | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA18942 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| rhynchospora_tenuis_mRNA18943 | Alkaloid | GES | low | borderline | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| rhynchospora_tenuis_mRNA2220 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| rhynchospora_tenuis_mRNA3439 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| rhynchospora_tenuis_mRNA8818 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |