PlantSME Plant secondary metabolism enzyme database

Ricinus communis (ricinus_communis)

Imported from atlas release summary for Ricinus communis.

1747
Candidate Protein Records
1492
Pathway-Level Records
3650
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.42% Alkaloid pathway 23.26% Phenylpropanoid pathway 19.5% Flavonoid pathway 11.53% Rosmarinic acid pathway 9.18% Steroid pathway 7.1%
Family Distribution
C4H 6.25% C3'H/CYP98A 6.05% BAHD 5.73% CYP76 4.03% 4CL 3.86% UGT 3.75% IFS 3.59% POD 3.51%
Other Families 63.23%
More Families (96)
T3O 127 3.48% UFGT 121 3.32% 7DLGT 118 3.23% F3H 99 2.71% DWF4/CYP90B1 90 2.47% F3'H/CYP75B 78 2.14% TRI/TRII 71 1.95% NMT 70 1.92% CODM/T6ODM 66 1.81% STR 60 1.64% BR6OX2/CYP85A2 59 1.62% CYP71 55 1.51% CAS 53 1.45% SMT1/SMT2/SMT3 53 1.45% TPS 52 1.42% CAD 48 1.32% GES 47 1.29% H6H 45 1.23% CYP90D1 39 1.07% CSE 36 0.99% LAC 36 0.99% T16H 35 0.96% COMT 35 0.96% 16OMT 34 0.93% IFR 33 0.9% TAT 33 0.9% HCT 32 0.88% GS 30 0.82% IO 29 0.79% F3'5'H/CYP75A 27 0.74% FNS 25 0.68% SGD 24 0.66% ANR 24 0.66% RAS 24 0.66% F5H/CYP84A 23 0.63% PYKS 22 0.6% BBE 21 0.58% 7DLH 21 0.58% G8O/G8H 21 0.58% PAL 21 0.58% PMT 18 0.49% CCR 18 0.49% NCS 17 0.47% CNMT 17 0.47% BR6OX1/CYP85A1 16 0.44% SLS 15 0.41% CYP51G1 15 0.41% COR 13 0.36% CYP719 12 0.33% CPD/CYP90A1 12 0.33% AACT 12 0.33% 8HGO 11 0.3% LAMT 11 0.3% ANS/LDOX 10 0.27% HPPR 10 0.27% CYP80B1 9 0.25% CCoAOMT 9 0.25% MPO 8 0.22% FPPS 8 0.22% 6OMT_4OMT_SOMT 7 0.19% ISY 7 0.19% DFR 7 0.19% CPR 7 0.19% ROT3/CYP90C1 7 0.19% SQE 7 0.19% GGPPS 7 0.19% ODC 6 0.16% CHS 6 0.16% SQS/FDFT1 6 0.16% MVK 6 0.16% TYDC_DDC 5 0.14% XMT_MXMT_DXMT 4 0.11% DET2 4 0.11% DXS 4 0.11% TDC 3 0.08% CHI 3 0.08% DWF1 3 0.08% HMGR 3 0.08% MVD 3 0.08% MCT/IspD 3 0.08% ADC 2 0.05% FLS 2 0.05% SMO1/SMO2 2 0.05% PMK 2 0.05% CMK/IspE 2 0.05% HMGS 2 0.05% FK 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03% DXR 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 439 19 BAHD (169) View species results
Alkaloid pathway 347 21 7DLGT (67) View species results
Phenylpropanoid pathway 291 11 POD (120) View species results
Flavonoid pathway 172 11 UFGT (109) View species results
Rosmarinic acid pathway 137 7 C4H (52) View species results
Steroid pathway 106 13 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1417 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BR6OX2/CYP85A2
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Protein/Isoform Record Pathway Family Confidence Status
Rcom301700235930.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301700235940.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301700235950.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301740242530.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301740243830.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301740245460.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301740245480.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301900252020.1 Steroid BR6OX2/CYP85A2 low borderline
Rcom301900253700.1 Steroid BR6OX2/CYP85A2 low borderline