Ricinus communis (ricinus_communis)
Imported from atlas release summary for Ricinus communis.
1492
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1492
Candidate Genes
C4H
6.25%
C3'H/CYP98A
6.05%
BAHD
5.73%
CYP76
4.03%
4CL
3.86%
UGT
3.75%
IFS
3.59%
POD
3.51%
Other Families
63.23%
More Families (96)
T3O
127
3.48%
UFGT
121
3.32%
7DLGT
118
3.23%
F3H
99
2.71%
DWF4/CYP90B1
90
2.47%
F3'H/CYP75B
78
2.14%
TRI/TRII
71
1.95%
NMT
70
1.92%
CODM/T6ODM
66
1.81%
STR
60
1.64%
BR6OX2/CYP85A2
59
1.62%
CYP71
55
1.51%
CAS
53
1.45%
SMT1/SMT2/SMT3
53
1.45%
TPS
52
1.42%
CAD
48
1.32%
GES
47
1.29%
H6H
45
1.23%
CYP90D1
39
1.07%
CSE
36
0.99%
LAC
36
0.99%
T16H
35
0.96%
COMT
35
0.96%
16OMT
34
0.93%
IFR
33
0.9%
TAT
33
0.9%
HCT
32
0.88%
GS
30
0.82%
IO
29
0.79%
F3'5'H/CYP75A
27
0.74%
FNS
25
0.68%
SGD
24
0.66%
ANR
24
0.66%
RAS
24
0.66%
F5H/CYP84A
23
0.63%
PYKS
22
0.6%
BBE
21
0.58%
7DLH
21
0.58%
G8O/G8H
21
0.58%
PAL
21
0.58%
PMT
18
0.49%
CCR
18
0.49%
NCS
17
0.47%
CNMT
17
0.47%
BR6OX1/CYP85A1
16
0.44%
SLS
15
0.41%
CYP51G1
15
0.41%
COR
13
0.36%
CYP719
12
0.33%
CPD/CYP90A1
12
0.33%
AACT
12
0.33%
8HGO
11
0.3%
LAMT
11
0.3%
ANS/LDOX
10
0.27%
HPPR
10
0.27%
CYP80B1
9
0.25%
CCoAOMT
9
0.25%
MPO
8
0.22%
FPPS
8
0.22%
6OMT_4OMT_SOMT
7
0.19%
ISY
7
0.19%
DFR
7
0.19%
CPR
7
0.19%
ROT3/CYP90C1
7
0.19%
SQE
7
0.19%
GGPPS
7
0.19%
ODC
6
0.16%
CHS
6
0.16%
SQS/FDFT1
6
0.16%
MVK
6
0.16%
TYDC_DDC
5
0.14%
XMT_MXMT_DXMT
4
0.11%
DET2
4
0.11%
DXS
4
0.11%
TDC
3
0.08%
CHI
3
0.08%
DWF1
3
0.08%
HMGR
3
0.08%
MVD
3
0.08%
MCT/IspD
3
0.08%
ADC
2
0.05%
FLS
2
0.05%
SMO1/SMO2
2
0.05%
PMK
2
0.05%
CMK/IspE
2
0.05%
HMGS
2
0.05%
FK
1
0.03%
HYD1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
DWF7
1
0.03%
HDS/IspG
1
0.03%
HDR/IspH
1
0.03%
IDI
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 439 | 19 | BAHD (169) | View species results |
| Alkaloid pathway | 347 | 21 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 291 | 11 | POD (120) | View species results |
| Flavonoid pathway | 172 | 11 | UFGT (109) | View species results |
| Rosmarinic acid pathway | 137 | 7 | C4H (52) | View species results |
| Steroid pathway | 106 | 13 | CAS (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1417 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 265 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rcom275580005260.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom284290026670.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom285060028260.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom288720037340.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom293850046180.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom295890051120.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom296360061840.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom297320089020.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom297690100820.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom298300119980.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom298300119990.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom298300120030.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom298300120060.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom298440129070.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom298510133350.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom298890140490.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom298890140500.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom299080146760.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom299290157150.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom299290157750.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom299530163050.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom300680185150.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom300730186710.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom300740187330.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom300740187340.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom300760190640.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom300780192320.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301280201350.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom301310205750.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301310205790.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom301460215160.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom301470215890.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301470220270.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301570227310.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom301570227340.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom301700239210.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301700239490.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301900251080.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301900253320.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom301900255070.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom302060258610.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom319480270840.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom340130279000.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom350840283140.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom359560286470.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom444420295330.1 | Rosmarinic Acid | 4CL | medium | pass |
| Rcom570660308450.1 | Rosmarinic Acid | 4CL | low | borderline |
| Rcom276470007270.1 | Rosmarinic Acid | C4H | low | borderline |
| Rcom278270011280.1 | Rosmarinic Acid | C4H | low | borderline |
| Rcom279550014350.1 | Rosmarinic Acid | C4H | low | borderline |